Factsheet for Solyc05g014000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027955	Potato	extracellular	98.5	98.5
VIT_01s0137g00240.t01	Wine grape	extracellular	84.54	84.12
Solyc03g111690.2.1	Tomato	nucleus	82.04	81.64
GSMUA_Achr6P28260_001	Banana	endoplasmic reticulum, extracellular	80.55	79.36
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	80.8	78.45
CDY41506	Canola	endoplasmic reticulum, extracellular, vacuole	80.8	78.45
Solyc06g071840.1.1	Tomato	vacuole	70.07	78.27
Bra035852.1-P	Field mustard	extracellular	79.8	78.05
Solyc02g093580.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	77.81	77.23
CDY48132	Canola	endoplasmic reticulum, golgi	80.3	75.23
CDY16732	Canola	endoplasmic reticulum, golgi	79.8	74.77
AT5G63180.1	Thale cress	plastid	78.8	73.15
CDY65626	Canola	golgi	81.05	71.59
Solyc09g061890.2.1	Tomato	endoplasmic reticulum, extracellular	71.32	65.15
Solyc06g083580.2.1	Tomato	nucleus	68.58	63.36
Solyc09g091430.2.1	Tomato	nucleus	70.57	62.75
Solyc11g008140.1.1	Tomato	plasma membrane	61.35	54.79
Solyc03g058890.2.1	Tomato	extracellular	57.86	51.67
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	55.61	50.8
Solyc02g087670.2.1	Tomato	extracellular	55.86	50.22
Solyc06g071020.2.1	Tomato	extracellular	54.36	50.11
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	54.11	49.89
Solyc09g008380.2.1	Tomato	nucleus	59.6	49.48
Solyc05g055510.2.1	Tomato	plasma membrane	60.85	49.39
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	60.35	48.02
Solyc03g058910.2.1	Tomato	extracellular, golgi	47.38	47.74
Solyc05g007080.2.1	Tomato	extracellular	53.37	46.93
Solyc02g067450.2.1	Tomato	extracellular	49.63	32.31
Solyc02g080910.2.1	Tomato	extracellular	54.86	28.99

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	UniProt:K4BYC1
PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF26	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc05g014000.2	EnsemblPlants:Solyc05g014000.2.1
UniParc:UPI00027662AA	SEG:seg	:	:	:	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4BYC1]

Coordinates

chr5:-:7501147..7503953

Molecular Weight (calculated)

44279.5 Da

IEP (calculated)

7.742

GRAVY (calculated)

-0.314

Length

401 amino acids

Sequence
(BLAST)

001: MGMPLSFLLL LTLLSPIFTF SSHVPDPEVI VQQVNEKINA SRRNLGYLSC GTGNPIDDCW RCDPNWEKNR QRLADCAIGF GKQAIGGKDG KIYVVTDTSD
101: DPVNPKPGTL RYGAIQDEPL WIIFSRDMVI KLKEELMLNS FKTIDGRGAS VHIAGGPCIT IQYVTNIIIH GLNIHDCKQG GNAYVRDSPQ HYGWRTISDG
201: DGVSIFGGSH VWVDHCSLSN CNDGLIDAIR GSTAITISNN YMTHHNKVML LGHSDSFTRD KNMQVTIAFN HFGEGLVQRM PRCRHGYFHV VNNDYTHWEM
301: YAIGGSASPT INSQGNRFLA PNDIFNKEVT KHEDAAESEW KNWNWRSEGD LMLNGAFFIR SGAGASSSYA KASSLSARPS TLVNSITMNA GALGCKKGKR
401: C

Best Arabidopsis Sequence Match ( AT1G67750.1 )
(BLAST)

001: MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC

Arabidopsis Description

Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.