Factsheet for Solyc05g055510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	95.14	82.31
Solyc11g008140.1.1	Tomato	plasma membrane	64.78	71.27
HORVU5Hr1G005000.2	Barley	cytosol	45.14	65.4
VIT_13s0019g04910.t01	Wine grape	extracellular	64.78	64.52
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	65.79	64.48
KRG90767	Soybean	extracellular	64.57	63.55
KRH35994	Soybean	extracellular	63.56	62.3
CDX70244	Canola	vacuole	54.66	61.22
Solyc05g014000.2.1	Tomato	extracellular, nucleus	49.39	60.85
Solyc02g093580.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	49.39	60.4
Solyc03g111690.2.1	Tomato	nucleus	48.58	59.55
CDX67615	Canola	endoplasmic reticulum, extracellular, vacuole	59.11	59.47
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	58.7	59.06
CDY07515	Canola	endoplasmic reticulum, extracellular, vacuole	58.7	58.94
Solyc06g071840.1.1	Tomato	vacuole	42.31	58.22
Solyc09g008380.2.1	Tomato	nucleus	55.67	56.94
CDY11284	Canola	extracellular, golgi	58.7	56.86
CDY56964	Canola	endoplasmic reticulum, extracellular, vacuole	56.48	56.71
AT5G04310.1	Thale cress	plasma membrane	59.31	56.56
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	56.07	56.53
AT3G54920.1	Thale cress	extracellular	57.29	56.49
Bra005799.1-P	Field mustard	extracellular, golgi	58.1	56.05
Solyc09g061890.2.1	Tomato	endoplasmic reticulum, extracellular	49.8	56.04
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	58.91	55.53
CDY58428	Canola	endoplasmic reticulum, golgi, plastid	57.89	55.53
Solyc06g083580.2.1	Tomato	nucleus	48.58	55.3
CDY41382	Canola	endoplasmic reticulum, golgi	58.7	55.03
CDX73426	Canola	endoplasmic reticulum, extracellular, vacuole	56.48	53.97
Solyc09g091430.2.1	Tomato	nucleus	48.58	53.22
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	42.11	47.38
Solyc06g071020.2.1	Tomato	extracellular	41.5	47.13
Solyc05g007080.2.1	Tomato	extracellular	42.71	46.27
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	40.49	45.98
Solyc03g058910.2.1	Tomato	extracellular, golgi	36.84	45.73
Solyc03g058890.2.1	Tomato	extracellular	41.5	45.66
Solyc02g087670.2.1	Tomato	extracellular	40.08	44.39
Solyc02g067450.2.1	Tomato	extracellular	38.87	31.17
Solyc02g080910.2.1	Tomato	extracellular	40.28	26.22

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	UniProt:K4C2M7
PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF11	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc05g055510.2	EnsemblPlants:Solyc05g055510.2.1
TMHMM:TMhelix	UniParc:UPI000276723F	SEG:seg	:	:	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4C2M7]

Coordinates

chr5:+:65130199..65133112

Molecular Weight (calculated)

54557.4 Da

IEP (calculated)

6.340

GRAVY (calculated)

-0.187

Length

494 amino acids

Sequence
(BLAST)

001: MISLTFILSF FFFLILSFSS LITSTFNNQT LSHQHPFPES VVQQVNRRIN ESISRRQISD TTVINYQCLT GNPIDDCWRC DPNWVDNRQQ LADCAIGFGH
101: GAVGGKGGRY YLVSDPSDYD TVNPTPGTLR HAVIQDEPLW ITFAGDMIIR LKHELMINNY KTIDGRGANV HVTGGGCITL QYVTNVIIHN IHVYNCIPSG
201: NSNIRQSTTQ VGWRGMSDGD GISIYSSRNI WIDHCALSHC TDGLIDAIMG STAITISNSY FTHHDKVMLL GHDDRYVPDV GMQVTIAFNH FGEGLVQRMP
301: RCRRGYIHVV NNDFTEWQMY AIGGSANPTI NSQGNRFTAP EDPNAKEVTK RVDVDERDWT EWNWRTEGDE MVNGAYFVPS GDGISNQYAL ASSMEPKSAF
401: LIEQLTMNAG VIGVPRDTTV AMSFGGRTRT TIAANRSSSV RPSRSKDGDG GFLEKVFGSV ASAGSSTSSP SSSTITILFS LLILYIITNN IGLL

Best Arabidopsis Sequence Match ( AT5G04310.3 )
(BLAST)

001: MVAHERRIHN LQKPTCICII WFCLLVSLSH HGRASSTSAS IFNLSLPHQH PFPEHVVLNV QRKLNDSLSR RQLLTYQQDD GTTASSPIPS CITGNPIDDC
101: WRCDPNWSAN RQRLADCSIG FGQGTLGGKG GQFYLVTDSS DNDAANPIPG TLRHAVIQPE PLWIIFSSDM GIKLKHELII GSYKTIDGRG TNIQITGHGC
201: LTIQQVSHVI IHNVHIHHCK PSGNTLVASS PTHVGFRGVS DGDGISVSAS HHIWVDHCSL GYCADGLIDV ILASTAVTIS NNYFSHHDEV MLLGHDDRYT
301: ADKGMQVTIA FNHFGEGLVQ RMPRCRHGYI HVVNNDFTAW EMYAIGGSAS PTINSQGNRY TAPIDPNAKE VTKRVDSNEK HWSGWNWRTE GDVMVNGAFF
401: VPSGDGVSPA YARATSVQPK AAAIIDQLTV NAGVFGDPRY YYQIIYSIAS STQTSIYFIT FIFASILLFD SFNYF

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F4JW80]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.