CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90767	Soybean	extracellular	93.45	93.82
HORVU5Hr1G005000.2	Barley	cytosol	48.61	71.85
VIT_13s0019g04910.t01	Wine grape	extracellular	69.44	70.56
PGSC0003DMT400011046	Potato	mitochondrion	40.08	69.42
Solyc11g008140.1.1	Tomato	plasma membrane	60.32	67.71
PGSC0003DMT400079776	Potato	plasma membrane	65.67	67.55
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	65.48	65.48
KRH67761	Soybean	endoplasmic reticulum, extracellular, vacuole	59.33	63.62
Solyc05g055510.2.1	Tomato	plasma membrane	62.3	63.56
KRH19954	Soybean	endoplasmic reticulum, extracellular, plasma membrane	59.92	63.31
CDX70244	Canola	vacuole	54.76	62.59
KRH58231	Soybean	extracellular	49.8	62.13
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	60.12	61.71
KRG93976	Soybean	extracellular	49.4	61.63
CDY11284	Canola	extracellular, golgi	62.3	61.57
CDX67615	Canola	endoplasmic reticulum, extracellular, vacuole	59.92	61.51
CDY07515	Canola	endoplasmic reticulum, extracellular, vacuole	59.92	61.38
KRH03893	Soybean	nucleus	49.4	61.33
KRH57176	Soybean	nucleus	49.01	60.84
Bra005799.1-P	Field mustard	extracellular, golgi	61.71	60.74
KRH54276	Soybean	endoplasmic reticulum, golgi, vacuole	48.81	60.29
AT5G04310.1	Thale cress	plasma membrane	61.9	60.23
CDY58428	Canola	endoplasmic reticulum, golgi, plastid	61.31	60.0
KRH63675	Soybean	endoplasmic reticulum, extracellular, vacuole	48.41	59.8
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	58.13	59.8
KRH31375	Soybean	nucleus	47.62	59.7
CDY56964	Canola	endoplasmic reticulum, extracellular, vacuole	58.13	59.55
CDY41382	Canola	endoplasmic reticulum, golgi	61.9	59.2
AT3G54920.1	Thale cress	extracellular	58.73	59.08
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	60.91	58.59
KRG97506	Soybean	endoplasmic reticulum, golgi	46.83	58.27
CDX73426	Canola	endoplasmic reticulum, extracellular, vacuole	58.53	57.06
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	63.1	55.69
KRG97507	Soybean	endoplasmic reticulum, extracellular	43.06	55.36
KRH31373	Soybean	extracellular	40.48	54.99
KRG90246	Soybean	nucleus	48.02	54.02
KRH33474	Soybean	nucleus	48.21	54.0
KRH11474	Soybean	extracellular	39.09	52.81
KRH46795	Soybean	nucleus	47.02	52.55
KRG99852	Soybean	nucleus	46.83	52.33
KRH02031	Soybean	extracellular	40.28	51.01
KRH36487	Soybean	extracellular	28.17	49.82
KRH36488	Soybean	extracellular	38.69	49.12
KRH54508	Soybean	extracellular	32.14	48.65
KRH63402	Soybean	extracellular	40.48	46.9
KRH45851	Soybean	extracellular	41.87	46.78
KRH01130	Soybean	extracellular	39.09	44.77
KRG93502	Soybean	extracellular	39.29	44.7
KRH69345	Soybean	extracellular	39.48	44.52
KRH74782	Soybean	extracellular	39.48	44.42
KRH18498	Soybean	endoplasmic reticulum, extracellular, vacuole	38.89	44.24

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:100789303	Gene3D:2.160.20.10	MapMan:21.3.5.2	EMBL:ACUP02006715	InterPro:AmbAllergen
EnsemblPlantsGene:GLYMA_10G277200	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	UniProt:I1LEZ6	InterPro:IPR012334
EnsemblPlants:KRH35994	ProteinID:KRH35994	ProteinID:KRH35994.1	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF11	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00023CE6BB	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:49938040..49943119

Molecular Weight (calculated)

54913.9 Da

IEP (calculated)

6.282

GRAVY (calculated)

-0.204

Length

504 amino acids

Sequence
(BLAST)

001: MLPITCILFM CLLSSFSPPI NALLNLNLTL PHQYPHPESV VQDIQRKVNA SLRRREMLSK DEQQGMSSCL TGNPIDDCWR CEPNWAAERQ KLAECGLGFG
101: KYAMGGKGGQ IYIVTDSSDR DPANPIPGTL RHAVIQDEAL WIVFAADMTI NLKHELIFNS YKTLDGRGAN VHVTGHGCIT LQYVSNIIIH NIHIHHCTPS
201: GNTNIRASPT HVGWRGKSDG DGISIFGSRK IWIDHCSLSY CTDGLIDAIM GSTGITISNS HFAHHDEVML LGHDDKYLVD RGMQVTIAFN HFGEGLVQRM
301: PRCRLGYIHV VNNDFTQWRM YAIGGSANPT INSQGNRYTA PGDPDAKEVT KRVDTDDREW SGWNWRTEGD IMVNGAFFVP SGAAGQSGQY QEATSVQAKS
401: AVQIDQLTMY SGVLGDPRDN GDLYPGFNGG GTVTGATSKG NTDGSSSDDG GDFFGMIFRG GSSSSSSSQA APPSSVLFVS IFLSLLIIFV LDTTTNHAFL
501: LSLL

Best Arabidopsis Sequence Match ( AT5G04310.2 )
(BLAST)

001: MVAHERRIHN LQKPTCICII WFCLLVSLSH HGRASSTSAS IFNLSLPHQH PFPEHVVLNV QRKLNDSLSR RQLLTYQQDD GTTASSPIPS CITGNPIDDC
101: WRCDPNWSAN RQRLADCSIG FGQGTLGGKG GQFYLVTDSS DNDAANPIPG TLRHAVIQPE PLWIIFSSDM GIKLKHELII GSYKTIDGRG TNIQITGHGC
201: LTIQQVSHVI IHNVHIHHCK PSGNTLVASS PTHVGFRGVS DGDGISVSAS HHIWVDHCSL GYCADGLIDV ILASTAVTIS NNYFSHHDEV MLLGHDDRYT
301: ADKGMQVTIA FNHFGEGLVQ RMPRCRHGYI HVVNNDFTAW EMYAIGGSAS PTINSQGNRY TAPIDPNAKE VTKRVDSNEK HWSGWNWRTE GDVMVNGAFF
401: VPSGDGVSPA YARATSVQPK AAAIIDQLTV NAGVFGDPSG RNGQGGSFPG ITNGGGTITR GYSKSGPAGG GSGSDSDDGL FTLIFGNNSG AVALRPGQVW
501: SILLIIILYW YIPHHTRS

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F4JW80]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.