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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 6
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:plastid, secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:extracellular, plasma membrane, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH57176 Soybean nucleus 98.03 98.03
KRH63675 Soybean endoplasmic reticulum, extracellular, vacuole 90.89 90.44
KRH54276 Soybean endoplasmic reticulum, golgi, vacuole 89.66 89.22
PGSC0003DMT400039385 Potato extracellular 85.96 86.6
CDY24847 Canola endoplasmic reticulum, extracellular 85.71 85.71
Bra010482.1-P Field mustard endoplasmic reticulum, extracellular 85.47 85.47
CDY03419 Canola endoplasmic reticulum, extracellular 85.47 85.47
CDY08948 Canola endoplasmic reticulum, extracellular 85.47 85.47
Solyc03g111690.2.1 Tomato nucleus 84.73 85.36
Bra013833.1-P Field mustard endoplasmic reticulum, vacuole 85.22 85.22
CDY34310 Canola endoplasmic reticulum, vacuole 85.22 85.22
CDY11033 Canola endoplasmic reticulum, extracellular 84.24 84.24
CDX92652 Canola endoplasmic reticulum, extracellular 83.99 83.99
PGSC0003DMT400069632 Potato vacuole 83.5 83.7
KRG93976 Soybean extracellular 82.76 83.17
Solyc06g071840.1.1 Tomato vacuole 73.4 83.01
KRH58231 Soybean extracellular 82.51 82.92
AT4G24780.1 Thale cress endoplasmic reticulum, extracellular 83.0 82.6
KRH31375 Soybean nucleus 80.54 81.34
KRG97506 Soybean endoplasmic reticulum, golgi 80.3 80.49
Bra019209.1-P Field mustard endoplasmic reticulum, extracellular 78.82 76.92
KRG97507 Soybean endoplasmic reticulum, extracellular 70.44 72.96
KRH31373 Soybean extracellular 65.52 71.7
KRG90246 Soybean nucleus 72.66 65.85
KRH33474 Soybean nucleus 71.67 64.67
KRH46795 Soybean nucleus 71.43 64.3
KRG99852 Soybean nucleus 71.43 64.3
KRH11474 Soybean extracellular 55.42 60.32
KRH54508 Soybean extracellular 46.8 57.06
KRH02031 Soybean extracellular 55.91 57.04
KRH36487 Soybean extracellular 39.66 56.49
KRH36488 Soybean extracellular 55.17 56.42
KRH19954 Soybean endoplasmic reticulum, extracellular, plasma membrane 64.53 54.93
KRH67761 Soybean endoplasmic reticulum, extracellular, vacuole 63.55 54.89
KRH63402 Soybean extracellular 58.37 54.48
KRH45851 Soybean extracellular 58.37 52.55
KRH74782 Soybean extracellular 57.39 52.01
KRH69345 Soybean extracellular 56.4 51.23
KRH01130 Soybean extracellular 54.68 50.45
KRG90767 Soybean extracellular 61.33 49.6
KRH18498 Soybean endoplasmic reticulum, extracellular, vacuole 53.94 49.44
KRG93502 Soybean extracellular 53.94 49.44
KRH35994 Soybean extracellular 61.33 49.4
Protein Annotations
KEGG:00040+4.2.2.2EntrezGene:100101868Gene3D:2.160.20.10MapMan:21.3.5.2EMBL:ACUP02010365InterPro:AmbAllergen
EnsemblPlantsGene:GLYMA_17G126500GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005975GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016829GO:GO:0030570GO:GO:0045490
GO:GO:0046872UniProt:I1MUL0InterPro:IPR012334EnsemblPlants:KRH03893ProteinID:KRH03893ProteinID:KRH03893.1
PFAM:PF00544PRINTS:PR00807PANTHER:PTHR31683PANTHER:PTHR31683:SF28InterPro:Pec_lyaseInterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulenceSMART:SM00656SUPFAM:SSF51126SignalP:SignalP-noTMUniParc:UPI000233E66BSEG:seg
Description
hypothetical protein
Coordinates
chr17:-:10078819..10080944
Molecular Weight (calculated)
44436.4 Da
IEP (calculated)
7.216
GRAVY (calculated)
-0.274
Length
406 amino acids
Sequence
(BLAST)
001: MATTFLSLLF LLFSLLTPTL ISSSPVQDPE FVAQEVHRKI NASVARRNLG YLSCATGNPI DDCWRCDPNW EKNRQRLADC AIGFGKNAIG GKNGKIYVVT
101: DSGDDDPVTP KPGTLRYAVI QDEPLWIIFA RDMVIKLKEE LIMNSFKTID GRGASVHIAG GPCITIQYVT NVIIHGINIH DCKQGGNAMV RDSPRHYGWR
201: TISDGDGVSI FGGSHVWVDH CSLSNCNDGL IDAIHGSTGI TISNNYMTHH DKVMLLGHSD SYTQDKSMQV TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY
301: THWEMYAIGG SANPTINSQG NRFVAPDDRF SKEVTKHEDA PESEWKGWNW RSEGDLLVNG AFFTASGAGA SSSYARASSL SARPSSLVGS ITTGAGALSC
401: RKGSRC
Best Arabidopsis Sequence Match ( AT4G24780.1 )
(BLAST)
001: MKMQTKKLFI TIVSFLLYAP LFLSSPVPDP ESVVEEVHKS INASVAGRRK LGYLSCTTGN PIDDCWRCDP HWEQHRQRLA DCAIGFGKNA IGGRDGRIYV
101: VTDSGNDNPV SPKPGTLRHA VVQDEPLWII FQRDMTIQLK EELIMNSFKT IDGRGASVHI SGGPCITIQY VTNIIIHGIH IHDCKQGGNA MVRSSPRHFG
201: WRTISDGDGV SIFGGSHVWV DHCSFSNCED GLIDAIMGST AITLSNNHMT HHDKVMLLGH SDTYSRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWEMYAI GGSANPTINS QGNRFLAPNI RFSKEVTKHE DAPESEWKRW NWRSSGDLLL NGAFFTPSGG AASSSYAKAS SLGAKPSSLV GPLTSTSGAL
401: NCRKGSRC
Arabidopsis Description
Probable pectate lyase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M8]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.