Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11033 | Canola | endoplasmic reticulum, extracellular | 99.01 | 99.01 |
| CDY08948 | Canola | endoplasmic reticulum, extracellular | 95.81 | 95.81 |
| CDY24847 | Canola | endoplasmic reticulum, extracellular | 95.32 | 95.32 |
| CDY03419 | Canola | endoplasmic reticulum, extracellular | 95.07 | 95.07 |
| CDY34310 | Canola | endoplasmic reticulum, vacuole | 95.07 | 95.07 |
| AT4G24780.1 | Thale cress | endoplasmic reticulum, extracellular | 94.09 | 93.63 |
| Bra019209.1-P | Field mustard | endoplasmic reticulum, extracellular | 92.86 | 90.62 |
| KRH03893 | Soybean | nucleus | 83.99 | 83.99 |
| KRH57176 | Soybean | nucleus | 83.99 | 83.99 |
| PGSC0003DMT400039385 | Potato | extracellular | 83.0 | 83.62 |
| Solyc03g111690.2.1 | Tomato | nucleus | 82.76 | 83.37 |
| KRH63675 | Soybean | endoplasmic reticulum, extracellular, vacuole | 81.03 | 80.64 |
| CDY18330 | Canola | cytosol | 28.82 | 80.14 |
| KRH54276 | Soybean | endoplasmic reticulum, golgi, vacuole | 80.3 | 79.9 |
| PGSC0003DMT400069632 | Potato | vacuole | 79.31 | 79.51 |
| CDY41506 | Canola | endoplasmic reticulum, extracellular, vacuole | 79.8 | 78.45 |
| Solyc06g071840.1.1 | Tomato | vacuole | 68.72 | 77.72 |
| CDY56520 | Canola | extracellular | 77.83 | 77.64 |
| CDY28857 | Canola | extracellular | 77.34 | 77.15 |
| CDY01846 | Canola | endoplasmic reticulum, extracellular, vacuole | 76.85 | 76.85 |
| CDY56220 | Canola | endoplasmic reticulum, extracellular, vacuole | 76.85 | 76.85 |
| CDY12666 | Canola | extracellular | 76.6 | 76.6 |
| CDY32557 | Canola | extracellular | 76.35 | 76.35 |
| CDY70583 | Canola | cytosol | 45.07 | 75.31 |
| CDY48132 | Canola | endoplasmic reticulum, golgi | 79.31 | 75.23 |
| CDY16732 | Canola | endoplasmic reticulum, golgi | 79.06 | 75.0 |
| CDX83690 | Canola | endoplasmic reticulum, extracellular, vacuole | 74.14 | 73.06 |
| CDY65626 | Canola | golgi | 80.05 | 71.59 |
| CDY20049 | Canola | plastid, vacuole | 72.41 | 71.36 |
| CDY00156 | Canola | extracellular, plastid | 72.17 | 71.12 |
| CDY03964 | Canola | extracellular | 71.67 | 70.63 |
| CDY19932 | Canola | extracellular | 71.43 | 69.38 |
| CDY56668 | Canola | extracellular | 71.18 | 69.14 |
| CDY34149 | Canola | extracellular | 61.08 | 69.08 |
| CDY05305 | Canola | endoplasmic reticulum, extracellular, vacuole | 70.2 | 68.51 |
| CDY24654 | Canola | endoplasmic reticulum, extracellular, vacuole | 69.95 | 68.27 |
| CDY33938 | Canola | extracellular | 69.46 | 67.63 |
| CDY05655 | Canola | extracellular | 69.21 | 67.39 |
| CDY01119 | Canola | endoplasmic reticulum, extracellular | 70.94 | 66.21 |
| CDY47327 | Canola | endoplasmic reticulum, extracellular | 70.44 | 66.05 |
| CDY46471 | Canola | endoplasmic reticulum, extracellular | 69.46 | 64.24 |
| CDX89799 | Canola | extracellular | 67.0 | 63.11 |
| CDY61137 | Canola | extracellular | 66.5 | 62.65 |
| CDX86615 | Canola | endoplasmic reticulum, extracellular, golgi | 66.26 | 62.41 |
| CDY15517 | Canola | endoplasmic reticulum, extracellular, golgi | 66.26 | 62.41 |
| CDY53564 | Canola | endoplasmic reticulum, extracellular, vacuole | 67.98 | 60.66 |
| CDY01151 | Canola | endoplasmic reticulum, extracellular, vacuole | 67.49 | 60.62 |
| CDY18738 | Canola | endoplasmic reticulum, extracellular | 68.23 | 58.19 |
| CDY66697 | Canola | endoplasmic reticulum, golgi | 63.05 | 57.27 |
| CDX77400 | Canola | endoplasmic reticulum, extracellular | 69.21 | 57.11 |
| CDX77470 | Canola | golgi, plasma membrane | 63.79 | 56.43 |
| CDY06557 | Canola | extracellular | 52.96 | 55.56 |
| CDY20748 | Canola | extracellular | 52.96 | 55.41 |
| CDX98092 | Canola | extracellular | 47.78 | 54.49 |
| CDY30040 | Canola | extracellular | 47.78 | 54.49 |
| CDX82902 | Canola | endoplasmic reticulum, extracellular, vacuole | 43.6 | 54.13 |
| CDX70244 | Canola | vacuole | 57.64 | 53.06 |
| CDX98091 | Canola | extracellular | 48.03 | 52.56 |
| CDY30041 | Canola | extracellular | 47.54 | 52.02 |
| CDX79122 | Canola | extracellular | 49.75 | 50.37 |
| CDX78152 | Canola | extracellular | 58.87 | 50.21 |
| CDX73573 | Canola | extracellular | 58.62 | 50.0 |
| CDY27438 | Canola | extracellular | 49.51 | 49.26 |
| CDX67560 | Canola | plasma membrane | 59.36 | 49.18 |
| CDX76388 | Canola | extracellular | 49.26 | 49.02 |
| CDX67615 | Canola | endoplasmic reticulum, extracellular, vacuole | 58.62 | 48.47 |
| CDY07515 | Canola | endoplasmic reticulum, extracellular, vacuole | 58.62 | 48.37 |
| CDY56964 | Canola | endoplasmic reticulum, extracellular, vacuole | 57.39 | 47.36 |
| CDY28691 | Canola | endoplasmic reticulum, extracellular, vacuole | 54.68 | 47.33 |
| CDY11284 | Canola | extracellular, golgi | 59.11 | 47.06 |
| CDX74293 | Canola | endoplasmic reticulum, extracellular | 54.43 | 46.92 |
| CDX91953 | Canola | endoplasmic reticulum, extracellular | 54.43 | 46.92 |
| CDY58428 | Canola | endoplasmic reticulum, golgi, plastid | 58.87 | 46.41 |
| CDY41382 | Canola | endoplasmic reticulum, golgi | 59.61 | 45.92 |
| CDX70590 | Canola | endoplasmic reticulum, extracellular | 53.69 | 45.89 |
| CDX78607 | Canola | endoplasmic reticulum, extracellular | 53.69 | 45.89 |
| CDY17432 | Canola | extracellular | 51.48 | 45.53 |
| CDX73426 | Canola | endoplasmic reticulum, extracellular, vacuole | 57.64 | 45.26 |
| CDY04133 | Canola | extracellular | 50.99 | 45.1 |
| CDY63769 | Canola | extracellular | 52.96 | 44.89 |
| CDY41679 | Canola | endoplasmic reticulum, plasma membrane | 50.49 | 44.86 |
| CDX96854 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 50.49 | 44.76 |
| CDY68729 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 50.49 | 44.76 |
| CDX85564 | Canola | extracellular | 51.97 | 44.61 |
| CDY09356 | Canola | extracellular | 50.0 | 44.42 |
| CDY45254 | Canola | endoplasmic reticulum | 49.75 | 44.1 |
| CDY13312 | Canola | plasma membrane | 58.13 | 44.03 |
| CDY03043 | Canola | extracellular | 49.75 | 44.01 |
| CDY39314 | Canola | extracellular | 49.51 | 43.79 |
| CDY45202 | Canola | extracellular | 49.51 | 43.79 |
| CDX69550 | Canola | endoplasmic reticulum, extracellular | 53.2 | 43.29 |
| CDY66593 | Canola | endoplasmic reticulum, extracellular | 53.2 | 43.29 |
| CDX81636 | Canola | endoplasmic reticulum | 49.51 | 41.53 |
| CDY53552 | Canola | extracellular | 50.49 | 41.41 |
| CDY70492 | Canola | endoplasmic reticulum, extracellular | 0.74 | 5.45 |
| CDX81635 | Canola | mitochondrion, nucleus | 0.74 | 1.97 |
| CDX96858 | Canola | mitochondrion, nucleus | 0.74 | 1.97 |
| CDY04136 | Canola | mitochondrion, nucleus | 0.74 | 1.97 |
| CDY09355 | Canola | mitochondrion, nucleus | 0.74 | 1.97 |
| CDY41678 | Canola | mitochondrion, nucleus | 0.74 | 1.97 |
| CDY45199 | Canola | mitochondrion, nucleus | 0.74 | 1.97 |
| CDY45253 | Canola | mitochondrion, nucleus | 0.74 | 1.97 |
| CDY53553 | Canola | mitochondrion, nucleus | 0.74 | 1.97 |
| CDY66531 | Canola | mitochondrion, nucleus | 0.74 | 1.97 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | GO:A0A078DUR0 | InterPro:AmbAllergen | EnsemblPlants:CDX92652 |
| ProteinID:CDX92652 | ProteinID:CDX92652.1 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0045490 | EnsemblPlantsGene:GSBRNA2T00154463001 | InterPro:IPR012334 | PFAM:PF00544 | PRINTS:PR00807 |
| PANTHER:PTHR31683 | PANTHER:PTHR31683:SF28 | InterPro:Pec_lyase | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00656 |
| SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniPathway:UPA00545 | UniParc:UPI0001B6406D | : | : |
Description
BnaC07g39100D
Coordinates
chrLK031873:-:194802..196620
Molecular Weight (calculated)
44758.2 Da
IEP (calculated)
8.232
GRAVY (calculated)
-0.302
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTKKLFISI VSFLLYAPLI FSSPVPDPEA IVEEVHKSIN ASVAARRKLG YLSCTTGNPI DDCWRCDPHW ETHRQRLADC AIGFGKNAIG GRDGRIYVVT
101: DSGNDDPVTP KPGTLRHAVV QDEPLWIIFQ RDMTIRLKEE LIMNSFKTID GRGASVHIAG GPCVTIQYVT NIIIHGVHIH DCKRGGNAMV RSSPRHYGWR
201: TVSDGDGVSI FGGSHVWVDH CSLSNCEDGL IDAIMGSTAI TLSNNYMTHH DKVMLLGHSD TYARDKNMQI TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY
301: THWEMYAIGG SANPTINSQG NRFVAPNIRF SKEVTKHEDA PESEWKRWNW RSSGDLLLNG AFFTPSGGAQ SSSYAKASSL GAKPSSLVGP LTVGSGALNC
401: RKGSRC
101: DSGNDDPVTP KPGTLRHAVV QDEPLWIIFQ RDMTIRLKEE LIMNSFKTID GRGASVHIAG GPCVTIQYVT NIIIHGVHIH DCKRGGNAMV RSSPRHYGWR
201: TVSDGDGVSI FGGSHVWVDH CSLSNCEDGL IDAIMGSTAI TLSNNYMTHH DKVMLLGHSD TYARDKNMQI TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY
301: THWEMYAIGG SANPTINSQG NRFVAPNIRF SKEVTKHEDA PESEWKRWNW RSSGDLLLNG AFFTPSGGAQ SSSYAKASSL GAKPSSLVGP LTVGSGALNC
401: RKGSRC
001: MKMQTKKLFI TIVSFLLYAP LFLSSPVPDP ESVVEEVHKS INASVAGRRK LGYLSCTTGN PIDDCWRCDP HWEQHRQRLA DCAIGFGKNA IGGRDGRIYV
101: VTDSGNDNPV SPKPGTLRHA VVQDEPLWII FQRDMTIQLK EELIMNSFKT IDGRGASVHI SGGPCITIQY VTNIIIHGIH IHDCKQGGNA MVRSSPRHFG
201: WRTISDGDGV SIFGGSHVWV DHCSFSNCED GLIDAIMGST AITLSNNHMT HHDKVMLLGH SDTYSRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWEMYAI GGSANPTINS QGNRFLAPNI RFSKEVTKHE DAPESEWKRW NWRSSGDLLL NGAFFTPSGG AASSSYAKAS SLGAKPSSLV GPLTSTSGAL
401: NCRKGSRC
101: VTDSGNDNPV SPKPGTLRHA VVQDEPLWII FQRDMTIQLK EELIMNSFKT IDGRGASVHI SGGPCITIQY VTNIIIHGIH IHDCKQGGNA MVRSSPRHFG
201: WRTISDGDGV SIFGGSHVWV DHCSFSNCED GLIDAIMGST AITLSNNHMT HHDKVMLLGH SDTYSRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWEMYAI GGSANPTINS QGNRFLAPNI RFSKEVTKHE DAPESEWKRW NWRSSGDLLL NGAFFTPSGG AASSSYAKAS SLGAKPSSLV GPLTSTSGAL
401: NCRKGSRC
Arabidopsis Description
Probable pectate lyase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M8]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.