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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:
  • nucleus 1
  • plastid 1
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, vacuole
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:vacuole
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra025274.1-P Field mustard extracellular 98.06 98.06
CDY34149 Canola extracellular 80.83 92.76
CDY03964 Canola extracellular 92.23 92.23
AT3G27400.2 Thale cress endoplasmic reticulum, vacuole 92.23 91.35
CDY00156 Canola extracellular, plastid 90.53 90.53
CDY20049 Canola plastid, vacuole 90.53 90.53
CDY18330 Canola cytosol 28.64 80.82
KRG93976 Soybean extracellular 77.43 78.96
KRH58231 Soybean extracellular 77.43 78.96
VIT_14s0219g00230.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 75.97 77.67
Solyc02g093580.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 75.73 77.23
PGSC0003DMT400032910 Potato endoplasmic reticulum, extracellular, vacuole 75.24 76.92
CDY08948 Canola endoplasmic reticulum, extracellular 74.27 75.37
CDY24847 Canola endoplasmic reticulum, extracellular 74.03 75.12
CDY34310 Canola endoplasmic reticulum, vacuole 73.79 74.88
CDY03419 Canola endoplasmic reticulum, extracellular 73.54 74.63
CDX92652 Canola endoplasmic reticulum, extracellular 73.06 74.14
CDY11033 Canola endoplasmic reticulum, extracellular 72.82 73.89
CDY56220 Canola endoplasmic reticulum, extracellular, vacuole 71.36 72.41
CDY01846 Canola endoplasmic reticulum, extracellular, vacuole 71.12 72.17
CDY28857 Canola extracellular 71.12 71.99
CDY56520 Canola extracellular 71.12 71.99
CDY70583 Canola cytosol 42.23 71.6
CDY41506 Canola endoplasmic reticulum, extracellular, vacuole 71.6 71.43
CDY12666 Canola extracellular 69.9 70.94
CDY32557 Canola extracellular 69.66 70.69
CDY48132 Canola endoplasmic reticulum, golgi 71.12 68.46
CDY16732 Canola endoplasmic reticulum, golgi 70.87 68.22
CDY65626 Canola golgi 71.6 64.98
CDY05305 Canola endoplasmic reticulum, extracellular, vacuole 65.29 64.66
CDY24654 Canola endoplasmic reticulum, extracellular, vacuole 65.05 64.42
CDY19932 Canola extracellular 64.56 63.64
CDY05655 Canola extracellular 64.32 63.55
CDY33938 Canola extracellular 64.32 63.55
CDY56668 Canola extracellular 64.32 63.4
CDX89799 Canola extracellular 64.32 61.48
CDY61137 Canola extracellular 64.08 61.25
CDY15517 Canola endoplasmic reticulum, extracellular, golgi 63.84 61.02
CDX86615 Canola endoplasmic reticulum, extracellular, golgi 63.59 60.79
CDY01119 Canola endoplasmic reticulum, extracellular 64.08 60.69
CDY47327 Canola endoplasmic reticulum, extracellular 63.35 60.28
CDY53564 Canola endoplasmic reticulum, extracellular, vacuole 65.29 59.12
CDY46471 Canola endoplasmic reticulum, extracellular 62.86 59.0
CDY01151 Canola endoplasmic reticulum, extracellular, vacuole 64.56 58.85
CDY18738 Canola endoplasmic reticulum, extracellular 65.78 56.93
CDY66697 Canola endoplasmic reticulum, golgi 60.44 55.7
CDX98092 Canola extracellular 47.82 55.34
CDX77470 Canola golgi, plasma membrane 61.41 55.12
CDY30040 Canola extracellular 47.57 55.06
CDX98091 Canola extracellular 49.27 54.72
CDY06557 Canola extracellular 50.97 54.26
CDY30041 Canola extracellular 48.79 54.18
CDY20748 Canola extracellular 50.97 54.12
CDX82902 Canola endoplasmic reticulum, extracellular, vacuole 42.48 53.52
CDX77400 Canola endoplasmic reticulum, extracellular 62.86 52.64
CDX70244 Canola vacuole 54.37 50.79
CDX79122 Canola extracellular 48.54 49.88
CDY27438 Canola extracellular 48.3 48.77
CDX78152 Canola extracellular 56.31 48.74
CDX73573 Canola extracellular 56.07 48.53
CDX76388 Canola extracellular 47.82 48.28
CDX67560 Canola plasma membrane 56.31 47.35
CDX74293 Canola endoplasmic reticulum, extracellular 53.88 47.13
CDX91953 Canola endoplasmic reticulum, extracellular 53.88 47.13
CDY28691 Canola endoplasmic reticulum, extracellular, vacuole 53.64 47.12
CDY07515 Canola endoplasmic reticulum, extracellular, vacuole 55.58 46.54
CDX67615 Canola endoplasmic reticulum, extracellular, vacuole 55.34 46.44
CDY56964 Canola endoplasmic reticulum, extracellular, vacuole 55.34 46.34
CDX70590 Canola endoplasmic reticulum, extracellular 53.4 46.32
CDY17432 Canola extracellular 51.21 45.97
CDX78607 Canola endoplasmic reticulum, extracellular 52.91 45.89
CDY41679 Canola endoplasmic reticulum, plasma membrane 50.73 45.73
CDY09356 Canola extracellular 50.49 45.51
CDY68729 Canola endoplasmic reticulum, extracellular, plasma membrane 50.49 45.41
CDY03043 Canola extracellular 50.49 45.32
CDY04133 Canola extracellular 50.49 45.32
CDX85564 Canola extracellular 51.94 45.24
CDY11284 Canola extracellular, golgi 55.83 45.1
CDY45202 Canola extracellular 50.24 45.1
CDX96854 Canola endoplasmic reticulum, extracellular, plasma membrane 50.0 44.98
CDY63769 Canola extracellular 52.18 44.89
CDY58428 Canola endoplasmic reticulum, golgi, plastid 55.34 44.27
CDX73426 Canola endoplasmic reticulum, extracellular, vacuole 55.34 44.1
CDY45254 Canola endoplasmic reticulum 48.79 43.89
CDY39314 Canola extracellular 48.79 43.79
CDX69550 Canola endoplasmic reticulum, extracellular 52.43 43.29
CDY41382 Canola endoplasmic reticulum, golgi 55.34 43.26
CDY13312 Canola plasma membrane 56.07 43.1
CDY66593 Canola endoplasmic reticulum, extracellular 52.18 43.09
CDX81636 Canola endoplasmic reticulum 49.27 41.94
CDY53552 Canola extracellular 50.0 41.62
CDY70492 Canola endoplasmic reticulum, extracellular 0.73 5.45
CDX81635 Canola mitochondrion, nucleus 0.24 0.66
CDX96858 Canola mitochondrion, nucleus 0.24 0.66
CDY04136 Canola mitochondrion, nucleus 0.24 0.66
CDY09355 Canola mitochondrion, nucleus 0.24 0.66
CDY41678 Canola mitochondrion, nucleus 0.24 0.66
CDY45199 Canola mitochondrion, nucleus 0.24 0.66
CDY45253 Canola mitochondrion, nucleus 0.24 0.66
CDY53553 Canola mitochondrion, nucleus 0.24 0.66
CDY66531 Canola mitochondrion, nucleus 0.24 0.66
Protein Annotations
KEGG:00040+4.2.2.2Gene3D:2.160.20.10MapMan:21.3.5.2GO:A0A078D3I7InterPro:AmbAllergenEnsemblPlants:CDX83690
ProteinID:CDX83690ProteinID:CDX83690.1GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009056
GO:GO:0009987GO:GO:0045490EnsemblPlantsGene:GSBRNA2T00139395001InterPro:IPR012334PFAM:PF00544PRINTS:PR00807
PANTHER:PTHR31683PANTHER:PTHR31683:SF29InterPro:Pec_lyaseInterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00656
SUPFAM:SSF51126UniPathway:UPA00545UniParc:UPI0004EE12E3SEG:seg::
Description
BnaC07g24300D
Coordinates
chrLK031833:+:1625620..1628381
Molecular Weight (calculated)
45881.0 Da
IEP (calculated)
7.941
GRAVY (calculated)
-0.403
Length
412 amino acids
Sequence
(BLAST)
001: MVSYSNNPFV YTFICLLSIG NTFVLSSSSL PHTQDPNLVV DEVNRSVFNA SRRSLAYLSC RTGNPIDDCW RCDPNWETNR QRLADCAIGF GKNAIGGRDG
101: RIYVVTDAAN DDPVNPRPGT LRHAVTQEEP LWIIFKRDMV IRLKKELIIT SFKTIDGRGS SVHITDGPCI KIHYETNIII HGIHIHDCKP GSGGMIRDGP
201: RHTGWWVPSD GDAVAIFGGK HIWIDHCSLS NCDDGLIDAI HGSTAITISN NYMTHHDKVM LLGHSDSYTQ DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH
301: VVNNDYTHWE MYAIGGSASP TIYSQGNRFL APNTRFNKEV TKHEDAPESE WRGWNWRSEG DMLLNGAYFR QSGAGASSTY ARASSLSARP SSLVGSITTT
401: AGTLSCRRGR RS
Best Arabidopsis Sequence Match ( AT3G27400.2 )
(BLAST)
001: MFRRMVSYSN NHFAYAFLLL LTIGNTLAFS SSLPDHVQDP NLVVDDVNRS VFNASRRSLA YLSCRTGNPI DDCWRCDPNW ETNRQRLADC AIGFGKNAIG
101: GRKGRIYVVT DPANDDPVNP RPGTLRYAVT QEEPLWIIFK RDMVIRLKKE LIITSFKTID GRGSSVHITD GPCLKIHYAT NIIIHGINIH DCKPGSGGMI
201: KDGPHHTGWW MQSDGDAVAI FGGKHVWIDH CSLSNCDDGL IDAIHGSTAI TISNNHMTHH DKVMLLGHSD SYTQDKNMQV TIAFNHFGEG LVQRMPRCRH
301: GYFHVVNNDY THWEMYAIGG SASPTIYSQG NRFLAPNTRF NKEVTKHEDA PESKWRDWNW RSEGDMLLNG AYFRESGAEA PSTYARASSL SARPSSLVGS
401: ITTTAGTLSC RRGRRC
Arabidopsis Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNU6]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.