Factsheet for Bra025274.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 1
vacuole 5
extracellular 7
endoplasmic reticulum 5
plasma membrane 5
golgi 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, golgi, mitochondrion, nucleus, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83690	Canola	endoplasmic reticulum, extracellular, vacuole	98.06	98.06
Bra033008.1-P	Field mustard	extracellular	89.56	92.71
AT3G27400.2	Thale cress	endoplasmic reticulum, vacuole	91.99	91.11
Bra039081.1-P	Field mustard	extracellular, plastid	90.05	90.05
KRH58231	Soybean	extracellular	76.7	78.22
KRG93976	Soybean	extracellular	76.7	78.22
Solyc02g093580.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	75.49	76.98
VIT_14s0219g00230.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	75.24	76.92
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	75.0	76.67
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	73.3	74.38
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	73.06	74.14
Bra004073.1-P	Field mustard	extracellular	70.87	71.74
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	70.39	71.43
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	70.63	70.46
Bra035852.1-P	Field mustard	extracellular	69.9	70.24
Bra033980.1-P	Field mustard	extracellular	69.17	70.2
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	67.72	67.07
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	62.62	63.7
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	63.84	63.68
Bra020672.1-P	Field mustard	extracellular	63.84	63.07
Bra036155.1-P	Field mustard	extracellular	63.84	62.92
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	63.59	61.94
Bra032494.1-P	Field mustard	extracellular	63.35	60.56
Bra015341.1-P	Field mustard	extracellular	63.11	60.32
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	63.11	60.32
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	63.84	58.31
Bra015000.1-P	Field mustard	golgi, plasma membrane	59.71	55.03
Bra019729.1-P	Field mustard	extracellular	48.3	53.78
Bra035588.1-P	Field mustard	extracellular	50.24	53.35
Bra019730.1-P	Field mustard	extracellular	49.76	53.25
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	62.38	52.24
Bra013585.1-P	Field mustard	extracellular	48.06	50.38
Bra006976.1-P	Field mustard	cytosol	54.61	49.23
Bra020859.1-P	Field mustard	extracellular	47.09	49.11
Bra012756.1-P	Field mustard	extracellular	44.17	46.79
Bra028549.1-P	Field mustard	plasma membrane	55.34	46.53
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	52.67	46.07
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	54.61	45.92
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	54.37	45.62
Bra026832.1-P	Field mustard	extracellular	50.0	45.58
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	52.43	45.47
Bra017412.1-P	Field mustard	extracellular	49.51	44.44
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	49.27	44.42
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	49.27	44.32
Bra024811.1-P	Field mustard	extracellular	49.27	44.23
Bra023504.1-P	Field mustard	extracellular	51.46	44.07
Bra005799.1-P	Field mustard	extracellular, golgi	54.37	43.75
Bra026221.1-P	Field mustard	endoplasmic reticulum	48.3	43.45
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	51.94	42.89
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	53.64	42.18

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra025274	EnsemblPlants:Bra025274.1
EnsemblPlants:Bra025274.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4E918	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF29	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI000253F5A4	SEG:seg	:	:	:

Description

AT3G27400 (E=4e-225) | pectate lyase family protein

Coordinates

chrA06:-:22456284..22459075

Molecular Weight (calculated)

45893.1 Da

IEP (calculated)

7.902

GRAVY (calculated)

-0.374

Length

412 amino acids

Sequence
(BLAST)

001: MVSYSNNPFV YAFICLLSIG NTFVLSSSSL PHTQDPNLVV DEVNRSVFNA SRRSLAYLSC RTGNPIDDCW RCDPNWETYR QRLADCAIGF GKNAIGGRDG
101: RIYVVTDSAN DDPVNPRPGT LRHAVTQEEP LWIIFKRDMV IRLKKELIIT SFKTIDGRGS SVHITDGPCI KIHYETNIII HGINIHDCKP GSGGMIRDGS
201: RHTGWWVPSD GDAVAIFGGK HIWIDHCSLS NCDDGLIDAI HGSTAITISN NYMTHHDKVM LLGHSDSYTQ DKNMQVTIAF NHVVEGLVQR MPRCRHGYFH
301: VVNNDYTHWE MYAIGGSASP TIYSQGNRFL APNTRFNKEV TKHEDAPESE WRGWNWRSEG DMLLNGAYFR QSGAGASSTY ARASSLSARP SSLVGSITTT
401: AGTLSCRRGR RC

Best Arabidopsis Sequence Match ( AT3G27400.2 )
(BLAST)

001: MFRRMVSYSN NHFAYAFLLL LTIGNTLAFS SSLPDHVQDP NLVVDDVNRS VFNASRRSLA YLSCRTGNPI DDCWRCDPNW ETNRQRLADC AIGFGKNAIG
101: GRKGRIYVVT DPANDDPVNP RPGTLRYAVT QEEPLWIIFK RDMVIRLKKE LIITSFKTID GRGSSVHITD GPCLKIHYAT NIIIHGINIH DCKPGSGGMI
201: KDGPHHTGWW MQSDGDAVAI FGGKHVWIDH CSLSNCDDGL IDAIHGSTAI TISNNHMTHH DKVMLLGHSD SYTQDKNMQV TIAFNHFGEG LVQRMPRCRH
301: GYFHVVNNDY THWEMYAIGG SASPTIYSQG NRFLAPNTRF NKEVTKHEDA PESKWRDWNW RSEGDMLLNG AYFRESGAEA PSTYARASSL SARPSSLVGS
401: ITTTAGTLSC RRGRRC

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNU6]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.