Factsheet for Bra036155.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19932	Canola	extracellular	99.76	99.76
CDY56668	Canola	extracellular	98.8	98.8
Bra020672.1-P	Field mustard	extracellular	94.98	95.2
AT5G48900.1	Thale cress	extracellular	93.54	93.77
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	85.17	87.9
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	77.51	78.45
Bra032494.1-P	Field mustard	extracellular	75.84	73.55
Bra015341.1-P	Field mustard	extracellular	75.6	73.32
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	75.36	73.09
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	72.49	71.63
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	69.38	71.43
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	68.66	70.69
Bra033980.1-P	Field mustard	extracellular	67.22	69.21
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	74.64	69.18
Bra004073.1-P	Field mustard	extracellular	66.99	68.8
Bra035852.1-P	Field mustard	extracellular	67.46	68.78
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	67.7	68.52
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	66.51	68.47
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	77.75	66.06
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	65.31	65.62
Bra025274.1-P	Field mustard	extracellular	62.92	63.84
Bra015000.1-P	Field mustard	golgi, plasma membrane	68.18	63.76
Bra039081.1-P	Field mustard	extracellular, plastid	62.68	63.59
Bra033008.1-P	Field mustard	extracellular	59.09	62.06
Bra035588.1-P	Field mustard	extracellular	51.44	55.41
Bra019730.1-P	Field mustard	extracellular	50.0	54.29
Bra019729.1-P	Field mustard	extracellular	47.37	53.51
Bra006976.1-P	Field mustard	cytosol	57.42	52.52
Bra013585.1-P	Field mustard	extracellular	48.8	51.91
Bra020859.1-P	Field mustard	extracellular	47.37	50.13
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	58.13	49.59
Bra028549.1-P	Field mustard	plasma membrane	57.89	49.39
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	57.89	49.29
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	55.5	48.84
Bra023504.1-P	Field mustard	extracellular	54.31	47.19
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	52.87	46.92
Bra005799.1-P	Field mustard	extracellular, golgi	56.46	46.09
Bra026832.1-P	Field mustard	extracellular	49.76	46.02
Bra012756.1-P	Field mustard	extracellular	42.58	45.76
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	54.31	45.49
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	56.7	45.23
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	49.52	45.2
Bra017412.1-P	Field mustard	extracellular	49.52	45.1
Bra024811.1-P	Field mustard	extracellular	48.8	44.44
Bra026221.1-P	Field mustard	endoplasmic reticulum	48.56	44.32
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	47.85	43.76

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra036155	EnsemblPlants:Bra036155.1
EnsemblPlants:Bra036155.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4F501	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF34	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI0002541EC5	SEG:seg	:	:	:

Description

AT5G48900 (E=5e-221) | pectate lyase family protein

Coordinates

chrA09:+:2420193..2424347

Molecular Weight (calculated)

46563.1 Da

IEP (calculated)

8.133

GRAVY (calculated)

-0.301

Length

418 amino acids

Sequence
(BLAST)

001: MGITQVLVLF ASALLLSSML FTGVDSTRSN ETWHEHAVEN PDEVAAMVDM SIRNSTERRR LGYFSCSTGN PIDDCWRCDR KWKLRRKHLA DCSIGFGRNA
101: IGGRDGRYYV VSDPGDDNPV NPTPGTLRHA VIQDEPLWIV FKRDMVITLK EELIMNSFKT IDGRGVNVHI ANGACVTIQY VTNIIIHGVH IHDCKPTGNA
201: MVRSSPSHYG WRTMADGDGI SIFGSSHIWI DHNSLSSCAD GLIDAVMSST AITISNNYFT HHNEVMLLGH SDTYTRDKVM QVTIAYNHFG EGLIQRMPRC
301: RHGYFHVVNN DYTHWEMYAI GGSASPTINS QGNRYLAPSN RFAKEVTKRD YAGEWQWKHW NWRSEGDLFL NGAFFTRSGS GLGASYARAS SLAAKSSSLV
401: GVITSNAGAL NCRVGRRC

Best Arabidopsis Sequence Match ( AT5G48900.1 )
(BLAST)

001: MAVTQILVVF ASALLLSMFF TGVDSTRSNE TWHEHAVENP EEVAAMVDMS IRNSTARRRL GYFSCSTGNP IDDCWRCDRR WQSRRKHLAN CAIGFGRNAI
101: GGRDGRYYVV SDPNDDNPVN PKPGTLRHAV IQEEPLWIVF KRDMVITLKE ELIMNSFKTI DGRGVNVHIA NGACITIQFV TNIIIHGIHI HDCRPTGNAM
201: VRSSPSHYGW RTMADGDGIS IFGSSHIWID HNSLSNCADG LIDAVMASTA ITISNNYFTH HNEVMLLGHS DTYTRDKVMQ VTIAYNHFGE GLIQRMPRCR
301: HGYFHVVNND YTHWEMYAIG GSASPTINSQ GNRYLAPRNR FAKEVTKRDY AGQWQWRHWN WRSEGDLFLN GAFFTRSGSG LGASYARASS LAAKSSSLVG
401: VITYNAGALN CRGGRRC

Arabidopsis Description

Probable pectate lyase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WF1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.