Factsheet for Bra019209.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum

Predictor Summary:

extracellular 7
golgi 5
plasma membrane 6
endoplasmic reticulum 6
vacuole 6
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11033	Canola	endoplasmic reticulum, extracellular	91.11	93.35
CDX92652	Canola	endoplasmic reticulum, extracellular	90.62	92.86
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	86.3	88.42
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	86.06	88.18
AT4G24780.1	Thale cress	endoplasmic reticulum, extracellular	85.34	87.01
KRH57176	Soybean	nucleus	76.92	78.82
KRH03893	Soybean	nucleus	76.92	78.82
PGSC0003DMT400039385	Potato	extracellular	76.2	78.66
Solyc03g111690.2.1	Tomato	nucleus	75.96	78.41
KRH63675	Soybean	endoplasmic reticulum, extracellular, vacuole	74.52	75.98
KRH54276	Soybean	endoplasmic reticulum, golgi, vacuole	74.28	75.74
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	74.04	74.58
PGSC0003DMT400069632	Potato	vacuole	72.36	74.32
Bra035852.1-P	Field mustard	extracellular	72.6	73.66
Bra004073.1-P	Field mustard	extracellular	71.39	72.97
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	70.43	72.17
Solyc06g071840.1.1	Tomato	vacuole	62.02	71.87
Bra033980.1-P	Field mustard	extracellular	69.95	71.67
Bra025274.1-P	Field mustard	extracellular	67.07	67.72
Bra039081.1-P	Field mustard	extracellular, plastid	65.87	66.5
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	65.14	65.62
Bra036155.1-P	Field mustard	extracellular	65.62	65.31
Bra033008.1-P	Field mustard	extracellular	62.26	65.08
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	62.74	64.44
Bra020672.1-P	Field mustard	extracellular	63.94	63.79
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	61.54	60.52
Bra015341.1-P	Field mustard	extracellular	60.82	58.7
Bra032494.1-P	Field mustard	extracellular	60.82	58.7
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	60.58	58.47
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	62.5	57.65
Bra015000.1-P	Field mustard	golgi, plasma membrane	58.41	54.36
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	63.7	53.86
Bra019729.1-P	Field mustard	extracellular	47.36	53.24
Bra035588.1-P	Field mustard	extracellular	48.8	52.32
Bra019730.1-P	Field mustard	extracellular	47.6	51.43
Bra006976.1-P	Field mustard	cytosol	54.09	49.23
Bra013585.1-P	Field mustard	extracellular	46.15	48.85
Bra020859.1-P	Field mustard	extracellular	45.67	48.1
Bra028549.1-P	Field mustard	plasma membrane	55.29	46.94
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	54.33	46.03
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	53.12	45.1
Bra012756.1-P	Field mustard	extracellular	41.59	44.47
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	50.24	44.37
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	50.0	43.79
Bra005799.1-P	Field mustard	extracellular, golgi	53.85	43.75
Bra017412.1-P	Field mustard	extracellular	47.6	43.14
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	54.09	42.94
Bra026832.1-P	Field mustard	extracellular	46.63	42.92
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	46.63	42.36
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	46.39	42.23
Bra023504.1-P	Field mustard	extracellular	48.56	42.0
Bra024811.1-P	Field mustard	extracellular	45.91	41.61
Bra026221.1-P	Field mustard	endoplasmic reticulum	45.67	41.48
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	49.52	41.28

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra019209	EnsemblPlants:Bra019209.1
EnsemblPlants:Bra019209.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4DRR6	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF28	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI0002541044	SEG:seg	:	:	:

Description

AT4G24780 (E=1e-197) | pectate lyase family protein

Coordinates

chrA03:-:25688195..25689745

Molecular Weight (calculated)

45645.2 Da

IEP (calculated)

8.414

GRAVY (calculated)

-0.357

Length

416 amino acids

Sequence
(BLAST)

001: MQTKKLFISI LSFLLYAPLI FSSPVPDPEA IVEEVHNTEE ARLPLLHHRQ PNRRLLAPPP PPGPPPPPAS PTAPSGSAHW ESHRHRLADC AIGFGKNAIG
101: GRDGRIYVVT DSGNDDPVTP KPGTLRHAVV QDEPLWIIFQ RDMTIRLKEE LIMNSFKTID GRGASVHIAG GPCVTIQYVT NIIIHGVHIH DCKRGGNAMV
201: RSSPRHYGWR TVSDGDGVSI FGGSHVWVDH CSLSNCEDGL IDAIMGSTAI TLSNNYMTHH DKVMLLGHSD TYARDKNMQI TIAFNHFGEG LVQRMPRCRH
301: GYFHVVNNDY THWEMYAIGG SANPTINSQG NRFVAPNIRF SKEVTKHEDA PESEWKRWNW RSSGDLLLNG AFFTPSGGAQ SSSYAKASSL GAKPSSLVGP
401: LTVGSGALNC RKGSRC

Best Arabidopsis Sequence Match ( AT4G24780.1 )
(BLAST)

001: MKMQTKKLFI TIVSFLLYAP LFLSSPVPDP ESVVEEVHKS INASVAGRRK LGYLSCTTGN PIDDCWRCDP HWEQHRQRLA DCAIGFGKNA IGGRDGRIYV
101: VTDSGNDNPV SPKPGTLRHA VVQDEPLWII FQRDMTIQLK EELIMNSFKT IDGRGASVHI SGGPCITIQY VTNIIIHGIH IHDCKQGGNA MVRSSPRHFG
201: WRTISDGDGV SIFGGSHVWV DHCSFSNCED GLIDAIMGST AITLSNNHMT HHDKVMLLGH SDTYSRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWEMYAI GGSANPTINS QGNRFLAPNI RFSKEVTKHE DAPESEWKRW NWRSSGDLLL NGAFFTPSGG AASSSYAKAS SLGAKPSSLV GPLTSTSGAL
401: NCRKGSRC

Arabidopsis Description

Probable pectate lyase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M8]
SUBAcon: [extracellular,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.