Factsheet for Bra029614.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24654	Canola	endoplasmic reticulum, extracellular, vacuole	99.26	96.63
CDY05305	Canola	endoplasmic reticulum, extracellular, vacuole	98.02	95.43
AT3G07010.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	95.56	93.03
Bra036155.1-P	Field mustard	extracellular	87.9	85.17
Bra020672.1-P	Field mustard	extracellular	87.65	85.13
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	77.53	76.03
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	76.79	72.16
Bra015341.1-P	Field mustard	extracellular	76.79	72.16
Bra032494.1-P	Field mustard	extracellular	76.3	71.69
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	72.84	69.74
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	69.14	68.97
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	68.64	68.47
Bra033980.1-P	Field mustard	extracellular	68.64	68.47
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	68.64	68.47
Bra004073.1-P	Field mustard	extracellular	68.15	67.81
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	75.06	67.41
Bra035852.1-P	Field mustard	extracellular	66.67	65.85
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	79.75	65.65
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	66.91	65.62
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	64.44	62.74
Bra025274.1-P	Field mustard	extracellular	63.7	62.62
Bra039081.1-P	Field mustard	extracellular, plastid	63.46	62.38
Bra015000.1-P	Field mustard	golgi, plasma membrane	68.4	61.97
Bra033008.1-P	Field mustard	extracellular	60.25	61.31
Bra035588.1-P	Field mustard	extracellular	50.37	52.58
Bra019729.1-P	Field mustard	extracellular	47.41	51.89
Bra019730.1-P	Field mustard	extracellular	49.14	51.69
Bra006976.1-P	Field mustard	cytosol	57.28	50.77
Bra013585.1-P	Field mustard	extracellular	48.15	49.62
Bra028549.1-P	Field mustard	plasma membrane	58.27	48.16
Bra020859.1-P	Field mustard	extracellular	46.67	47.85
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	55.8	46.12
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	55.31	45.62
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	52.84	45.05
Bra026832.1-P	Field mustard	extracellular	49.63	44.47
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	51.6	44.37
Bra012756.1-P	Field mustard	extracellular	42.47	44.22
Bra023504.1-P	Field mustard	extracellular	52.35	44.07
Bra005799.1-P	Field mustard	extracellular, golgi	55.06	43.55
Bra017412.1-P	Field mustard	extracellular	48.89	43.14
Bra024811.1-P	Field mustard	extracellular	48.64	42.92
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	52.84	42.89
Bra026221.1-P	Field mustard	endoplasmic reticulum	48.4	42.79
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	48.4	42.79
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	55.06	42.56
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	47.41	42.01

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra029614	EnsemblPlants:Bra029614.1
EnsemblPlants:Bra029614.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4ELE6	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF34	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI000254809A	SEG:seg	:	:	:

Description

AT3G24670 (E=2e-173) | pectate lyase family protein

Coordinates

chrA05:+:22974456..22978547

Molecular Weight (calculated)

44984.5 Da

IEP (calculated)

8.805

GRAVY (calculated)

-0.264

Length

405 amino acids

Sequence
(BLAST)

001: MAVTKLIFFA SALLVTTLFI GVNSSRSNET WHEHAVEKPE EVAAMVDMSI RNSTERRRLG YFSCATGNPI DDCWRCDRKW QLRRKRLADC SIGFGRNAIG
101: GRDGRYYVVT DPNDDDPVTP VPGTLRHAVI QNEPLWIVFK RDMVITLKEE LIMNSFKTID GRGVNVHIAN GACLTIQYVT NIIVHGIHIH DCKPTGNAMV
201: RSSPSHYGWR SMADGEAISI FGSSHIWIDH NSLSNCADGL VDAVMSSTAI TVMLLGHSDS YTRDKVMQVT IAYNHFGEGL IQRMPRCRHG YFHVVNNDYT
301: HWEMYAIGGS AGPTINSQGN RFLAPVNPFA KEVTKREYTG QSKWKHWNWR SEGDLFLNGA FFTRSGAGAG AGYARASSLS AKSSSLVGTM TSYSGALNCR
401: AGRRC

Best Arabidopsis Sequence Match ( AT3G07010.1 )
(BLAST)

001: MAVTKLILFA SALLLTALFI GVNASRSNET WHEHAVENPD EVAAMVDMSI RNSTERRRLG YFSCATGNPI DDCWRCDRKW QLRRKRLADC SIGFGRNAIG
101: GRDGRFYVVT DPGDDDPVNP IPGTLRHAVI QDEPLWIIFK RDMVITLKQE LIMNSFKTID GRGVNVHIAN GACLTIQYVT NIIVHGIHVH DCKPTGNAMV
201: RSSPSHYGFR SMADGDAISI FGSSHIWIDH NSLSNCADGL VDAVMSSTAI TVSNNFFTHH NEVMLLGHSD SYTRDKVMQV TIAYNHFGEG LIQRMPRCRH
301: GYFHVVNNDY THWEMYAIGG SAGPTINSQG NRFLAPVNPF AKEVTKREYT GESKWKHWNW RSEGDLFLNG AFFTRSGAGA GANYARASSL SAKSSSLVGT
401: MTSYSGALNC RAGRRC

Arabidopsis Description

Probable pectate lyase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Z8]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.