Factsheet for Bra040809.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 6
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18738	Canola	endoplasmic reticulum, extracellular	99.05	88.03
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	91.25	85.59
AT4G13710.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	93.62	84.26
HORVU2Hr1G002930.1	Barley	cytosol	54.14	83.58
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	65.25	76.67
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	77.78	76.51
GSMUA_Achr8P12860_001	Banana	cytosol	63.36	75.92
KRG90246	Soybean	nucleus	79.2	74.78
GSMUA_Achr4P26690_001	Banana	extracellular	64.78	74.66
KRH33474	Soybean	nucleus	78.96	74.22
GSMUA_Achr5P15620_001	Banana	cytosol	61.47	74.07
Bra020672.1-P	Field mustard	extracellular	72.58	73.62
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	74.47	73.09
GSMUA_Achr11P...	Banana	extracellular	62.88	73.08
Solyc09g091430.2.1	Tomato	nucleus	77.78	72.95
Bra015341.1-P	Field mustard	extracellular	74.23	72.85
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	69.74	72.84
PGSC0003DMT400076251	Potato	extracellular	77.07	72.77
Bra036155.1-P	Field mustard	extracellular	71.63	72.49
Bra032494.1-P	Field mustard	extracellular	73.52	72.16
Bra015000.1-P	Field mustard	golgi, plasma membrane	75.41	71.36
GSMUA_Achr7P04580_001	Banana	endoplasmic reticulum, extracellular	74.47	70.47
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	68.79	70.46
GSMUA_Achr3P00290_001	Banana	endoplasmic reticulum, extracellular, vacuole	68.09	70.07
Zm00001d004448_P001	Maize	endoplasmic reticulum	73.29	69.2
Zm00001d025067_P001	Maize	mitochondrion	74.23	69.16
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	65.72	68.47
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi	73.05	68.06
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	65.01	67.73
Bra004073.1-P	Field mustard	extracellular	64.78	67.32
Bra033980.1-P	Field mustard	extracellular	64.54	67.24
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	64.3	67.0
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	64.3	65.86
Bra035852.1-P	Field mustard	extracellular	63.83	65.85
TraesCS2D01G018000.1	Wheat	golgi	73.52	65.75
KXG25802	Sorghum	plastid	75.18	65.7
TraesCS2B01G024500.2	Wheat	golgi	74.0	65.07
TraesCS2A01G016500.1	Wheat	golgi	73.76	64.86
Bra025274.1-P	Field mustard	extracellular	61.94	63.59
Bra039081.1-P	Field mustard	extracellular, plastid	61.94	63.59
Bra033008.1-P	Field mustard	extracellular	58.87	62.56
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	71.63	61.59
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	60.52	61.54
HORVU2Hr1G002880.2	Barley	mitochondrion	72.58	60.2
Bra019730.1-P	Field mustard	extracellular	49.41	54.29
Bra019729.1-P	Field mustard	extracellular	46.81	53.51
Bra006976.1-P	Field mustard	cytosol	57.45	53.17
Bra035588.1-P	Field mustard	extracellular	47.99	52.32
Bra028549.1-P	Field mustard	plasma membrane	58.16	50.2
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	56.74	48.88
Bra020859.1-P	Field mustard	extracellular	45.39	48.61
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	56.26	48.57
Bra013585.1-P	Field mustard	extracellular	44.92	48.35
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	53.9	48.0
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	52.25	46.92
Bra023504.1-P	Field mustard	extracellular	53.19	46.78
Bra026832.1-P	Field mustard	extracellular	49.88	46.68
Bra017412.1-P	Field mustard	extracellular	50.12	46.19
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	49.65	45.85
Bra024811.1-P	Field mustard	extracellular	49.65	45.75
Bra005799.1-P	Field mustard	extracellular, golgi	55.32	45.7
Bra026221.1-P	Field mustard	endoplasmic reticulum	49.41	45.63
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	53.43	45.29
Bra012756.1-P	Field mustard	extracellular	41.61	45.24
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	55.32	44.66
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	48.23	44.64

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra040809	EnsemblPlants:Bra040809.1
EnsemblPlants:Bra040809.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4FI80	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF63	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
TMHMM:TMhelix	UniParc:UPI0002545818	SEG:seg	:	:	:

Description

AT4G13710 (E=8e-219) | pectate lyase family protein

Coordinates

chrA08:+:6019114..6022662

Molecular Weight (calculated)

46765.9 Da

IEP (calculated)

9.768

GRAVY (calculated)

-0.340

Length

423 amino acids

Sequence
(BLAST)

001: MASPSQKLTS VCLAVIVLLA LTATIFRKLE IPSSRKLKTE ELRSAKNNST MAAKRSEHNK TARRKLGFFS CGTGNPIDDC WRCDPNWHKN RKRLADCGIG
101: FGRNAIGGRD GRFYIVTDPT DDDVINPKPG TLRHAVIQEE PLWIVFKRDM VIELKQELIM NSFKTIDARG SNVHIANGAC ITIQFITNVI IHGLHIHDCK
201: PTGNAMVRSS PSHFGWRTMA DGDAVSIFGS SHIWIDHNSL SHCADGLVDA VMGSTAITVS NNHFTHHNEV MLLGHSDSYT KDKLMQVTIA YNHFGKGLVQ
301: RMPRCRHGYF HVVNNDYTHW EMYAIGGSAE PTINSQGNRY AAPMDRFAKE VTKRVGTDAS DWKKWNWRSE GDLLLNGAFF RASGAGTSAS YGRASSLAAK
401: PSSMVRTITS TAGALGCRKG RPC

Best Arabidopsis Sequence Match ( AT4G13710.1 )
(BLAST)

001: MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE VIQSSNSSTM AAIRKLKTEE FQSLNSSTMA ATRLDGEPQQ QQHAVADDPD MVADEVAKLV
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC

Arabidopsis Description

Probable pectate lyase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q944R1]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.