Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040809.1-P | Field mustard | endoplasmic reticulum, golgi, vacuole | 84.26 | 93.62 |
| Bra032730.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 85.53 | 89.14 |
| CDY53564 | Canola | endoplasmic reticulum, extracellular, vacuole | 86.17 | 89.01 |
| CDY01151 | Canola | endoplasmic reticulum, extracellular, vacuole | 85.32 | 88.72 |
| CDY18738 | Canola | endoplasmic reticulum, extracellular | 88.51 | 87.39 |
| HORVU2Hr1G002930.1 | Barley | cytosol | 49.57 | 85.04 |
| GSMUA_Achr11P... | Banana | cytosol, extracellular, vacuole | 61.28 | 80.0 |
| VIT_05s0051g00590.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 72.98 | 79.77 |
| GSMUA_Achr8P12860_001 | Banana | cytosol | 59.36 | 79.04 |
| GSMUA_Achr4P26690_001 | Banana | extracellular | 60.43 | 77.38 |
| KRG90246 | Soybean | nucleus | 73.4 | 77.01 |
| AT3G07010.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 68.09 | 76.92 |
| GSMUA_Achr5P15620_001 | Banana | cytosol | 57.45 | 76.92 |
| KRH33474 | Soybean | nucleus | 73.62 | 76.89 |
| AT1G04680.1 | Thale cress | extracellular | 70.0 | 76.33 |
| GSMUA_Achr11P... | Banana | extracellular | 58.94 | 76.1 |
| AT5G48900.1 | Thale cress | extracellular | 67.02 | 75.54 |
| Solyc09g091430.2.1 | Tomato | nucleus | 72.13 | 75.17 |
| PGSC0003DMT400076251 | Potato | extracellular | 71.28 | 74.78 |
| GSMUA_Achr3P00290_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 64.26 | 73.48 |
| GSMUA_Achr7P04580_001 | Banana | endoplasmic reticulum, extracellular | 69.57 | 73.15 |
| AT3G24230.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 69.57 | 72.35 |
| Zm00001d004448_P001 | Maize | endoplasmic reticulum | 68.72 | 72.1 |
| Zm00001d025067_P001 | Maize | mitochondrion | 69.15 | 71.59 |
| AT4G13210.2 | Thale cress | endoplasmic reticulum, extracellular | 65.96 | 70.78 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, golgi | 68.3 | 70.7 |
| AT1G67750.1 | Thale cress | endoplasmic reticulum, vacuole | 60.85 | 70.1 |
| AT3G24670.1 | Thale cress | endoplasmic reticulum, extracellular | 65.53 | 70.0 |
| AT4G24780.1 | Thale cress | endoplasmic reticulum, extracellular | 60.64 | 69.85 |
| TraesCS2D01G018000.1 | Wheat | golgi | 68.72 | 68.29 |
| KXG25802 | Sorghum | plastid | 70.21 | 68.18 |
| TraesCS2B01G024500.2 | Wheat | golgi | 68.94 | 67.36 |
| TraesCS2A01G016500.1 | Wheat | golgi | 68.51 | 66.94 |
| AT5G63180.1 | Thale cress | plastid | 59.36 | 64.58 |
| AT3G27400.2 | Thale cress | endoplasmic reticulum, vacuole | 57.02 | 64.42 |
| HORVU2Hr1G002880.2 | Barley | mitochondrion | 67.87 | 62.55 |
| AT5G55720.1 | Thale cress | endoplasmic reticulum, extracellular | 45.96 | 55.1 |
| AT1G11920.1 | Thale cress | endoplasmic reticulum, extracellular | 43.62 | 53.39 |
| AT3G53190.1 | Thale cress | extracellular | 53.19 | 51.76 |
| AT1G30350.1 | Thale cress | extracellular | 39.15 | 50.0 |
| AT4G22080.1 | Thale cress | extracellular | 41.06 | 48.98 |
| AT4G22090.1 | Thale cress | extracellular | 41.06 | 48.98 |
| AT3G54920.1 | Thale cress | extracellular | 51.06 | 47.9 |
| AT5G15110.1 | Thale cress | endoplasmic reticulum, extracellular | 47.87 | 47.67 |
| AT3G01270.1 | Thale cress | endoplasmic reticulum, extracellular | 47.66 | 47.16 |
| AT1G14420.1 | Thale cress | endoplasmic reticulum | 45.32 | 46.41 |
| AT5G04310.1 | Thale cress | plasma membrane | 50.85 | 46.14 |
| AT2G02720.1 | Thale cress | extracellular, vacuole | 43.4 | 44.84 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | EntrezGene:827005 | UniProt:A0A178UXZ8 | ProteinID:AAB69762.1 |
| ProteinID:AEE83315.1 | EMBL:AF424592 | ArrayExpress:AT4G13710 | EnsemblPlantsGene:AT4G13710 | RefSeq:AT4G13710 | TAIR:AT4G13710 |
| RefSeq:AT4G13710-TAIR-G | EnsemblPlants:AT4G13710.1 | TAIR:AT4G13710.1 | EMBL:AY142013 | InterPro:AmbAllergen | Unigene:At.22271 |
| ProteinID:CAB36835.1 | ProteinID:CAB78413.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016829 | GO:GO:0030570 |
| GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 | RefSeq:NP_567409.1 | ProteinID:OAO97732.1 | PFAM:PF00544 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00807 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF63 |
| InterPro:Pec_lyase | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q944R1 | SMART:SM00656 | SUPFAM:SSF51126 |
| TMHMM:TMhelix | UniParc:UPI00000A104D | SEG:seg | : | : | : |
Description
Probable pectate lyase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q944R1]
Coordinates
chr4:+:7962428..7966521
Molecular Weight (calculated)
51938.7 Da
IEP (calculated)
8.235
GRAVY (calculated)
-0.321
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE VIQSSNSSTM AAIRKLKTEE FQSLNSSTMA ATRLDGEPQQ QQHAVADDPD MVADEVAKLV
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.