Factsheet for GSMUA_Achr8P12860_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	86.12	84.44
GSMUA_Achr11P...	Banana	extracellular	84.99	82.42
GSMUA_Achr5P15620_001	Banana	cytosol	80.17	80.63
GSMUA_Achr4P26690_001	Banana	extracellular	80.45	77.38
GSMUA_Achr3P00290_001	Banana	endoplasmic reticulum, extracellular, vacuole	81.59	70.07
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	84.7	69.53
GSMUA_Achr7P04580_001	Banana	endoplasmic reticulum, extracellular	82.44	65.1
KRG90246	Soybean	nucleus	82.15	64.73
AT1G04680.1	Thale cress	extracellular	78.47	64.27
KRH33474	Soybean	nucleus	81.59	64.0
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	75.92	63.36
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi	81.02	63.0
PGSC0003DMT400076251	Potato	extracellular	79.89	62.95
GSMUA_Achr6P28260_001	Banana	endoplasmic reticulum, extracellular	72.24	62.65
CDX86615	Canola	endoplasmic reticulum, extracellular, golgi	76.49	62.65
CDY15517	Canola	endoplasmic reticulum, extracellular, golgi	76.49	62.65
CDY61137	Canola	extracellular	76.49	62.65
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	76.49	62.65
Solyc09g091430.2.1	Tomato	nucleus	79.89	62.53
CDX89799	Canola	extracellular	75.92	62.18
Bra032494.1-P	Field mustard	extracellular	75.92	62.18
Bra015341.1-P	Field mustard	extracellular	75.64	61.95
CDY01151	Canola	endoplasmic reticulum, extracellular, vacuole	78.47	61.28
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	78.19	61.2
CDY53564	Canola	endoplasmic reticulum, extracellular, vacuole	78.47	60.88
AT4G13710.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	79.04	59.36
CDY18738	Canola	endoplasmic reticulum, extracellular	78.75	58.4
Bra015000.1-P	Field mustard	golgi, plasma membrane	70.82	55.93
CDY66697	Canola	endoplasmic reticulum, golgi	70.54	55.7
CDX77470	Canola	golgi, plasma membrane	71.1	54.68
AT3G24230.1	Thale cress	endoplasmic reticulum, golgi, vacuole	69.69	54.42
GSMUA_Achr10P...	Banana	cytosol	50.99	52.02
GSMUA_Achr4P25120_001	Banana	extracellular	58.36	46.09
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	54.96	44.29
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	53.26	43.02
GSMUA_Achr10P...	Banana	extracellular	47.31	42.82
GSMUA_Achr1P03320_001	Banana	plasma membrane	60.06	41.49
GSMUA_Achr7P08840_001	Banana	nucleus	52.97	27.91

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr8G12860_001	EnsemblPlants:GSMUA_Achr8P12860_001
EnsemblPlants:GSMUA_Achr8T12860_001	InterPro:IPR012334	UniProt:M0TPY9	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF34	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
UniParc:UPI000294D242	SEG:seg	:	:	:	:

Description

Probable pectate lyase 15 [Source:GMGC_GENE;Acc:GSMUA_Achr8G12860_001]

Coordinates

chr8:-:9647859..9651439

Molecular Weight (calculated)

38563.3 Da

IEP (calculated)

6.856

GRAVY (calculated)

-0.342

Length

353 amino acids

Sequence
(BLAST)

001: MSPEKRSGPP FTAGREARVG AVDDPELVAS EVDMMISNST SRRALGYLSC GTGNPIDDCW RCDPEWHRHR KRLADCGIGM VITLKQELIM NSFKTIDGRG
101: VDVHIANGAC ITIQFVTNII IHGLHIHDCK PTGNAMVRSS PSHYGWRTMA DGDAVSMFGA SHIWVDHNSL SNCADGLVDA IMGSTAITIS NNYFTHHNEV
201: MLLGHSDSYV RDKAMQVTIA YNHFGEGLIQ RMPRCRHGYF HVVNNDYTHW EMYAIGGSAD PTINSQGNRY LAPVDQSAKE VTKRVDTDES EWKGWNWRSE
301: GDLLLNGAYF TPSGAGASAS YAKASSLGAK SSSMVGSITS DAGALNCRRG SHC

Best Arabidopsis Sequence Match ( AT1G04680.1 )
(BLAST)

001: MAVLPTWLLA MMCLLFFVGA MENTTHDNIS SLPRSDETEW NQHAVTNPDE VADEVLALTE MSVRNHTERR KLGYFTCGTG NPIDDCWRCD PNWHKNRKRL
101: ADCGIGFGRN AIGGRDGRFY VVTDPRDDNP VNPRPGTLRH AVIQDRPLWI VFKRDMVIQL KQELIVNSFK TIDGRGANVH IANGGCITIQ FVTNVIVHGL
201: HIHDCKPTGN AMVRSSETHF GWRTMADGDA ISIFGSSHVW IDHNSLSHCA DGLVDAVMGS TAITISNNHL THHNEVMLLG HSDSYMRDKA MQVTIAYNHF
301: GVGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSANPTIN SQGNRYAAPK NPFAKEVTKR VDTPASHWKG WNWRSEGDLL QNGAYFTSSG AAASGSYARA
401: SSLSAKSSSL VGHITSDAGA LPCRRGRQCS S

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A178W464]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.