Factsheet for GSMUA_AchrUn_randomP04250_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
nucleus 2
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G002930.1	Barley	cytosol	52.86	87.59
GSMUA_Achr7P04580_001	Banana	endoplasmic reticulum, extracellular	82.38	83.67
GSMUA_Achr3P00290_001	Banana	endoplasmic reticulum, extracellular, vacuole	74.89	82.73
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	64.76	81.67
GSMUA_Achr8P12860_001	Banana	cytosol	63.0	81.02
GSMUA_Achr5P15620_001	Banana	cytosol	61.23	79.2
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	74.01	78.14
GSMUA_Achr4P26690_001	Banana	extracellular	63.0	77.93
GSMUA_Achr11P...	Banana	extracellular	61.89	77.2
Zm00001d025067_P001	Maize	mitochondrion	74.23	74.23
Zm00001d004448_P001	Maize	endoplasmic reticulum	72.47	73.44
KRG90246	Soybean	nucleus	72.25	73.21
KRH33474	Soybean	nucleus	72.47	73.11
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	68.06	73.05
TraesCS2D01G018000.1	Wheat	golgi	75.33	72.3
GSMUA_Achr6P28260_001	Banana	endoplasmic reticulum, extracellular	64.54	71.99
TraesCS2A01G016500.1	Wheat	golgi	75.77	71.52
KXG25802	Sorghum	plastid	76.21	71.49
AT1G04680.1	Thale cress	extracellular	67.84	71.46
PGSC0003DMT400076251	Potato	extracellular	70.48	71.43
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	67.62	71.23
CDY15517	Canola	endoplasmic reticulum, extracellular, golgi	67.62	71.23
Solyc09g091430.2.1	Tomato	nucleus	70.7	71.18
CDX86615	Canola	endoplasmic reticulum, extracellular, golgi	67.4	71.0
CDY61137	Canola	extracellular	67.18	70.77
CDX89799	Canola	extracellular	67.18	70.77
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	70.26	70.73
TraesCS2B01G024500.2	Wheat	golgi	74.89	70.69
CDY01151	Canola	endoplasmic reticulum, extracellular, vacuole	70.26	70.58
Bra015341.1-P	Field mustard	extracellular	66.96	70.53
CDY53564	Canola	endoplasmic reticulum, extracellular, vacuole	70.48	70.33
Bra032494.1-P	Field mustard	extracellular	66.74	70.3
AT4G13710.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	70.7	68.3
CDY18738	Canola	endoplasmic reticulum, extracellular	70.93	67.65
HORVU2Hr1G002880.2	Barley	mitochondrion	74.89	66.67
Bra015000.1-P	Field mustard	golgi, plasma membrane	63.88	64.88
CDY66697	Canola	endoplasmic reticulum, golgi	63.44	64.43
AT3G24230.1	Thale cress	endoplasmic reticulum, golgi, vacuole	63.44	63.72
CDX77470	Canola	golgi, plasma membrane	63.88	63.18
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	52.42	54.34
GSMUA_Achr10P...	Banana	cytosol	41.41	54.34
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	50.0	51.95
GSMUA_Achr10P...	Banana	extracellular	44.05	51.28
GSMUA_Achr4P25120_001	Banana	extracellular	49.12	49.89
GSMUA_Achr1P03320_001	Banana	plasma membrane	49.78	44.23
GSMUA_Achr7P08840_001	Banana	nucleus	50.44	34.18

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	EnsemblPlantsGene:GSMUA_AchrUn_randomG04250_001	EnsemblPlants:GSMUA_AchrUn_randomP04250_001
EnsemblPlants:GSMUA_AchrUn_randomT04250_001	InterPro:IPR012334	UniProt:M0U687	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF34	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000295B671	SEG:seg	:	:

Description

Probable pectate lyase 15 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG04250_001]

Coordinates

chrchrUn_random:-:17971551..17975821

Molecular Weight (calculated)

49304.0 Da

IEP (calculated)

6.604

GRAVY (calculated)

-0.220

Length

454 amino acids

Sequence
(BLAST)

001: MTAGLRWIPP LLLLLLGFLL VLNGGRGWIG SERSSGSRNG GASRRSLREA SANATSADAS LEERAVTRAA EAAVDDPEEV ASTVLTTIIN STARRSLGYL
101: SCGSGNPIDD CWRCDPDWHV NRKKLADCGI GFGRNAIGGR DGELYVVTDS GDDDPVNPRP GTLRYAVIQD VPLWITFKHD MEITLKEELI MNSFKTIDGR
201: GVNVHIANGA CITIQYITNV IIHGLHIHDC KPTGNAMVRS SPSHYGWRTM ADGDAVSIFG SSHIWVDHCS LSNCADGLVD AVMGSTAITV SNNYFTHHNE
301: VMLLGHTDSY ARDSIMQVTI AFNHFGEGLI QRMPRCRHGY FHVVNNDYTH WEMYAIGGSA NPTINSQGNR YLAPTNPFAK EVTKRVDTDQ STWKNWNWRS
401: EGDLLLNGAF FTPSGAGASA SYARASSFGA KPSSLVDTLT SDAGVLSCQV GTRC

Best Arabidopsis Sequence Match ( AT4G13710.1 )
(BLAST)

001: MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE VIQSSNSSTM AAIRKLKTEE FQSLNSSTMA ATRLDGEPQQ QQHAVADDPD MVADEVAKLV
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC

Arabidopsis Description

Probable pectate lyase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q944R1]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.