Factsheet for Bra030583.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, golgi, endoplasmic reticulum

Predictor Summary:

extracellular 7
golgi 6
plasma membrane 6
endoplasmic reticulum 6
vacuole 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15517	Canola	endoplasmic reticulum, extracellular, golgi	100.0	100.0
AT1G04680.1	Thale cress	extracellular	94.2	94.2
Bra015341.1-P	Field mustard	extracellular	94.2	94.2
Bra032494.1-P	Field mustard	extracellular	93.04	93.04
HORVU2Hr1G002930.1	Barley	cytosol	52.2	82.12
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	79.12	79.3
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	64.5	77.22
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	72.16	76.79
GSMUA_Achr8P12860_001	Banana	cytosol	62.65	76.49
KRH33474	Soybean	nucleus	79.12	75.78
KRG90246	Soybean	nucleus	78.42	75.45
Bra036155.1-P	Field mustard	extracellular	73.09	75.36
Bra020672.1-P	Field mustard	extracellular	72.85	75.3
GSMUA_Achr5P15620_001	Banana	cytosol	61.25	75.21
GSMUA_Achr11P...	Banana	extracellular	63.34	75.0
GSMUA_Achr4P26690_001	Banana	extracellular	63.81	74.93
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	71.46	74.58
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	73.09	74.47
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	77.49	74.06
PGSC0003DMT400076251	Potato	extracellular	76.57	73.66
Solyc09g091430.2.1	Tomato	nucleus	77.03	73.61
GSMUA_Achr3P00290_001	Banana	endoplasmic reticulum, extracellular, vacuole	66.36	69.59
GSMUA_Achr7P04580_001	Banana	endoplasmic reticulum, extracellular	72.16	69.57
Zm00001d004448_P001	Maize	endoplasmic reticulum	72.16	69.42
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	64.04	67.98
Zm00001d025067_P001	Maize	mitochondrion	71.46	67.84
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi	71.23	67.62
Bra033980.1-P	Field mustard	extracellular	63.57	67.49
Bra004073.1-P	Field mustard	extracellular	63.34	67.08
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	62.88	66.75
Bra035852.1-P	Field mustard	extracellular	63.34	66.59
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	62.65	66.5
TraesCS2D01G018000.1	Wheat	golgi	72.62	66.17
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	63.34	66.1
Bra015000.1-P	Field mustard	golgi, plasma membrane	67.98	65.55
TraesCS2A01G016500.1	Wheat	golgi	72.62	65.07
TraesCS2B01G024500.2	Wheat	golgi	72.16	64.66
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	73.32	64.23
KXG25802	Sorghum	plastid	71.93	64.05
Bra025274.1-P	Field mustard	extracellular	60.32	63.11
Bra039081.1-P	Field mustard	extracellular, plastid	60.32	63.11
Bra033008.1-P	Field mustard	extracellular	57.08	61.81
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	58.47	60.58
HORVU2Hr1G002880.2	Barley	mitochondrion	71.46	60.39
Bra035588.1-P	Field mustard	extracellular	48.96	54.38
Bra019730.1-P	Field mustard	extracellular	48.26	54.03
Bra006976.1-P	Field mustard	cytosol	57.08	53.83
Bra019729.1-P	Field mustard	extracellular	45.48	52.97
Bra028549.1-P	Field mustard	plasma membrane	58.47	51.43
Bra013585.1-P	Field mustard	extracellular	45.71	50.13
Bra020859.1-P	Field mustard	extracellular	45.48	49.62
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	55.22	48.47
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	54.76	48.16
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	51.97	47.16
Bra017412.1-P	Field mustard	extracellular	50.12	47.06
Bra026832.1-P	Field mustard	extracellular	49.19	46.9
Bra024811.1-P	Field mustard	extracellular	49.65	46.62
Bra023504.1-P	Field mustard	extracellular	51.74	46.36
Bra012756.1-P	Field mustard	extracellular	41.76	46.27
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	48.72	45.85
Bra005799.1-P	Field mustard	extracellular, golgi	54.29	45.7
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	49.42	45.22
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	54.76	45.04
Bra026221.1-P	Field mustard	endoplasmic reticulum	47.8	44.98
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	51.97	44.89
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	46.64	43.98

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra030583	EnsemblPlants:Bra030583.1
EnsemblPlants:Bra030583.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4EP63	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF63	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI00025456E9	SEG:seg	:	:	:

Description

AT1G04680 (E=8e-237) | pectate lyase family protein

Coordinates

chrA08:+:21213970..21216321

Molecular Weight (calculated)

47929.7 Da

IEP (calculated)

8.244

GRAVY (calculated)

-0.357

Length

431 amino acids

Sequence
(BLAST)

001: MTVLPTWILA MMCLFFFVGA MENKTHDKIS SLSRSDEIEW NRHAVTNPDE VADEVLALVE MSARNHTERR KLGYFTCGTG NPIDDCWRCD RNWHKNRKRL
101: ADCGIGFGRN AIGGRDGRFY VVTDPSDHDA VNPRPGTLRH AVIQDRPLWI VFKRDMVIQL KQELIVNSFK TIDGRGANVH IANGGCITIQ FVTNVIVHGL
201: HIHDCRPTGN AMVRSSETHF GWRTMADGDA ISIFESSHVW IDHNSLSHCA DGLVDAVMGS TAITISNNHM THHNEVMLLG HSDSYTKDRA MQVTIAYNHF
301: GVGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSANPTIN SQGNRYAAPK NPFAKEVTKR VDTPASHWKG WNWRSEGDLL QNGAYFTSSG AAASGSYARA
401: SSLAAKSSSL VATITSEAGA LPCRRGRQCS S

Best Arabidopsis Sequence Match ( AT1G04680.1 )
(BLAST)

001: MAVLPTWLLA MMCLLFFVGA MENTTHDNIS SLPRSDETEW NQHAVTNPDE VADEVLALTE MSVRNHTERR KLGYFTCGTG NPIDDCWRCD PNWHKNRKRL
101: ADCGIGFGRN AIGGRDGRFY VVTDPRDDNP VNPRPGTLRH AVIQDRPLWI VFKRDMVIQL KQELIVNSFK TIDGRGANVH IANGGCITIQ FVTNVIVHGL
201: HIHDCKPTGN AMVRSSETHF GWRTMADGDA ISIFGSSHVW IDHNSLSHCA DGLVDAVMGS TAITISNNHL THHNEVMLLG HSDSYMRDKA MQVTIAYNHF
301: GVGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSANPTIN SQGNRYAAPK NPFAKEVTKR VDTPASHWKG WNWRSEGDLL QNGAYFTSSG AAASGSYARA
401: SSLSAKSSSL VGHITSDAGA LPCRRGRQCS S

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A178W464]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.