Factsheet for Bra004073.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56520	Canola	extracellular	100.0	100.0
CDY18330	Canola	cytosol	35.38	98.63
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	94.1	94.33
Bra033980.1-P	Field mustard	extracellular	93.86	94.09
AT1G67750.1	Thale cress	endoplasmic reticulum, vacuole	94.1	93.87
KRH31375	Soybean	nucleus	80.59	81.59
KRG97506	Soybean	endoplasmic reticulum, golgi	80.1	80.49
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	78.62	78.82
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	77.89	78.08
Bra035852.1-P	Field mustard	extracellular	76.66	76.1
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	76.66	75.54
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	72.97	71.39
Bra025274.1-P	Field mustard	extracellular	71.74	70.87
Bra039081.1-P	Field mustard	extracellular, plastid	71.01	70.15
Bra033008.1-P	Field mustard	extracellular	68.55	70.1
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	67.81	68.15
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	68.8	67.8
Bra036155.1-P	Field mustard	extracellular	68.8	66.99
Bra020672.1-P	Field mustard	extracellular	68.55	66.91
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	67.32	64.78
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	67.08	63.34
Bra015341.1-P	Field mustard	extracellular	66.34	62.65
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	69.04	62.31
Bra032494.1-P	Field mustard	extracellular	65.85	62.18
Bra015000.1-P	Field mustard	golgi, plasma membrane	63.64	57.94
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	69.29	57.32
Bra035588.1-P	Field mustard	extracellular	52.58	55.15
Bra019730.1-P	Field mustard	extracellular	51.84	54.81
Bra019729.1-P	Field mustard	extracellular	49.63	54.59
Bra006976.1-P	Field mustard	cytosol	57.99	51.64
Bra020859.1-P	Field mustard	extracellular	49.63	51.14
Bra013585.1-P	Field mustard	extracellular	49.14	50.89
Bra028549.1-P	Field mustard	plasma membrane	58.97	48.98
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	58.48	48.57
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	58.48	48.47
Bra012756.1-P	Field mustard	extracellular	45.95	48.07
Bra026832.1-P	Field mustard	extracellular	52.58	47.35
Bra005799.1-P	Field mustard	extracellular, golgi	57.74	45.9
Bra017412.1-P	Field mustard	extracellular	51.6	45.75
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	53.32	45.68
Bra023504.1-P	Field mustard	extracellular	53.81	45.53
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	52.58	45.44
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	51.11	45.41
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	50.86	45.3
Bra026221.1-P	Field mustard	endoplasmic reticulum	50.61	44.98
Bra024811.1-P	Field mustard	extracellular	50.37	44.66
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	57.0	44.27
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	53.32	43.49

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra004073	EnsemblPlants:Bra004073.1
EnsemblPlants:Bra004073.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4CIN9	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF28	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI0002541379	SEG:seg	:	:	:

Description

AT1G67750 (E=2e-218) | pectate lyase family protein

Coordinates

chrA07:-:16673698..16675206

Molecular Weight (calculated)

44864.1 Da

IEP (calculated)

8.427

GRAVY (calculated)

-0.298

Length

407 amino acids

Sequence
(BLAST)

001: MILLHQLSLS LFSCLFLVLA PTFTASNHVS DPELVVQEVN EKINASRRNL GVLSCGTGNP IDDCWRCDPK WEKNRQRLAD CAIGFGKHAI GGRDGRIYVV
101: TDSSDKDAVN PKPGTLRHAV IQDEPLWIIF ARDMVIKLKE ELMMNSFKTI DGRGASVHIA GGACITVQYV TNIIIHGVNI HDCKKRGNAY VRDSPSHYGW
201: RTASDGDAVS IFGGSHVWVD HCSLSNCDDG LVDAIRGSTA ITISNNYLTH HNKVMLLGHS DSYTRDKNMQ VTIAFNHFGE GLVQRMPRCR HGYFHVVNND
301: YTHWQMYAIG GSAAPTINSQ GNRFLAPNDH VFKEVTKYED APQSKWKNWN WRSEGDLFLN GAFFTPSGGR ASSSYAKASS LSARPSSLVA SVTGNAGSLS
401: CRKGSRC

Best Arabidopsis Sequence Match ( AT1G67750.1 )
(BLAST)

001: MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC

Arabidopsis Description

Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.