Factsheet for Bra009469.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, vacuole

Predictor Summary:

plastid 3
nucleus 1
extracellular 4
endoplasmic reticulum 2
vacuole 3
plasma membrane 3
golgi 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid, vacuole
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, mitochondrion, plasma membrane
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70244	Canola	vacuole	80.53	95.69
CDY41382	Canola	endoplasmic reticulum, golgi	95.8	95.26
Bra005799.1-P	Field mustard	extracellular, golgi	86.07	88.09
AT5G04310.1	Thale cress	plasma membrane	85.31	86.29
HORVU5Hr1G005000.2	Barley	cytosol	42.75	65.69
Solyc11g008140.1.1	Tomato	plasma membrane	55.73	65.03
VIT_13s0019g04910.t01	Wine grape	extracellular	59.54	62.9
PGSC0003DMT400079776	Potato	plasma membrane	58.21	62.24
KRG90767	Soybean	extracellular	59.54	62.15
PGSC0003DMT400011046	Potato	mitochondrion	34.16	61.51
KRH35994	Soybean	extracellular	58.59	60.91
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	57.06	60.9
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	55.34	59.18
Solyc05g055510.2.1	Tomato	plasma membrane	55.53	58.91
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	45.61	58.87
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	45.23	58.37
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	56.11	58.33
Bra006976.1-P	Field mustard	cytosol	50.19	57.55
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	44.47	57.39
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	45.04	57.14
Bra004073.1-P	Field mustard	extracellular	44.27	57.0
Bra036155.1-P	Field mustard	extracellular	45.23	56.7
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	44.66	56.66
Bra033980.1-P	Field mustard	extracellular	43.51	56.16
Bra035852.1-P	Field mustard	extracellular	43.7	55.85
Bra020672.1-P	Field mustard	extracellular	44.08	55.4
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	44.66	55.32
Bra028549.1-P	Field mustard	plasma membrane	51.53	55.1
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	42.56	55.06
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	45.04	54.76
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	42.94	54.09
Bra032494.1-P	Field mustard	extracellular	44.47	54.06
Bra039081.1-P	Field mustard	extracellular, plastid	42.37	53.88
Bra025274.1-P	Field mustard	extracellular	42.18	53.64
Bra015341.1-P	Field mustard	extracellular	44.08	53.6
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	45.42	52.77
Bra015000.1-P	Field mustard	golgi, plasma membrane	43.7	51.23
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	55.73	51.14
Bra019729.1-P	Field mustard	extracellular	36.07	51.08
Bra033008.1-P	Field mustard	extracellular	38.74	51.01
Bra035588.1-P	Field mustard	extracellular	37.6	50.77
Bra019730.1-P	Field mustard	extracellular	36.83	50.13
Bra013585.1-P	Field mustard	extracellular	37.4	49.87
Bra020859.1-P	Field mustard	extracellular	37.02	49.11
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	44.66	47.56
Bra012756.1-P	Field mustard	extracellular	33.02	44.47
Bra026832.1-P	Field mustard	extracellular	37.79	43.81
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	37.02	42.36
Bra026221.1-P	Field mustard	endoplasmic reticulum	36.64	41.92
Bra017412.1-P	Field mustard	extracellular	36.26	41.39
Bra024811.1-P	Field mustard	extracellular	36.07	41.18
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	36.26	40.34
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	36.45	40.21
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	34.92	40.04
Bra023504.1-P	Field mustard	extracellular	36.07	39.29
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	37.02	38.88

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra009469	EnsemblPlants:Bra009469.1
EnsemblPlants:Bra009469.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4CZ22	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF11	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
UniParc:UPI0002547970	SEG:seg	:	:	:	:

Description

AT5G04310 (E=9e-226) | pectate lyase family protein

Coordinates

chrA10:+:16813438..16817545

Molecular Weight (calculated)

56911.8 Da

IEP (calculated)

7.430

GRAVY (calculated)

-0.251

Length

524 amino acids

Sequence
(BLAST)

001: MVAHKRFHII QKPSCIWIIW FCLLVSLSRH GRASYSLSSS ASTSTSSFNL SLPHQHPFPE DIVLNVQRKL NDSLHRRNLL TYQQGDGDTT ASAPIPSCIT
101: GNPIDDCWRC DPNWSQNRQR LADCSIGFGQ GTLGGKGGRF YLVTDSSDDD AANPTPGTLR HAVIQPEPLW IVFSGDMGIK LRHELIVGSY KTIDGRGANV
201: QITGHGCLTI QQVSHVIIHN VHVHHCKPSG NTLVASSPTH VVFRGVSDGD GISVSASHHI WVDHCSLGYC SDGLIDVILA STAVTISNNY FHHHDEVMLL
301: GHDDRYTADT GMQVTIAFNH FGEGLVQRMP RCRHGYIHVV NNDFTAWEMY AIGGSANPTI NSQGNRYTAP INPNAKEVTK RVDTNEKHWA KWNWRTDGDV
401: MVNGAFFVPS GDGVSLAYAR ATSLQAKAAG FIDQLTVNAG VFGDPSGRNG QGGGFSGITD GGGTITRGYS KDGPSGGGSD SDGGLFSMIF GSNTNAASAA
501: LRQGHVWSIL FTILLNWYFS NHRR

Best Arabidopsis Sequence Match ( AT5G04310.2 )
(BLAST)

001: MVAHERRIHN LQKPTCICII WFCLLVSLSH HGRASSTSAS IFNLSLPHQH PFPEHVVLNV QRKLNDSLSR RQLLTYQQDD GTTASSPIPS CITGNPIDDC
101: WRCDPNWSAN RQRLADCSIG FGQGTLGGKG GQFYLVTDSS DNDAANPIPG TLRHAVIQPE PLWIIFSSDM GIKLKHELII GSYKTIDGRG TNIQITGHGC
201: LTIQQVSHVI IHNVHIHHCK PSGNTLVASS PTHVGFRGVS DGDGISVSAS HHIWVDHCSL GYCADGLIDV ILASTAVTIS NNYFSHHDEV MLLGHDDRYT
301: ADKGMQVTIA FNHFGEGLVQ RMPRCRHGYI HVVNNDFTAW EMYAIGGSAS PTINSQGNRY TAPIDPNAKE VTKRVDSNEK HWSGWNWRTE GDVMVNGAFF
401: VPSGDGVSPA YARATSVQPK AAAIIDQLTV NAGVFGDPSG RNGQGGSFPG ITNGGGTITR GYSKSGPAGG GSGSDSDDGL FTLIFGNNSG AVALRPGQVW
501: SILLIIILYW YIPHHTRS

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F4JW80]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.