Factsheet for PGSC0003DMT400060374

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055510.2.1	Tomato	plasma membrane	82.31	95.14
PGSC0003DMT400011046	Potato	mitochondrion	34.85	68.38
PGSC0003DMT400079776	Potato	plasma membrane	58.32	67.96
VIT_13s0019g04910.t01	Wine grape	extracellular	57.44	66.13
HORVU5Hr1G005000.2	Barley	cytosol	39.05	65.4
KRG90767	Soybean	extracellular	56.57	64.34
KRH35994	Soybean	extracellular	55.69	63.1
CDX70244	Canola	vacuole	47.29	61.22
PGSC0003DMT400027955	Potato	extracellular	42.38	60.35
PGSC0003DMT400069632	Potato	vacuole	42.56	60.0
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	42.21	59.8
CDX67615	Canola	endoplasmic reticulum, extracellular, vacuole	51.14	59.47
PGSC0003DMT400009869	Potato	cytosol	44.31	59.39
PGSC0003DMT400039385	Potato	extracellular	41.86	59.31
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	50.96	59.27
CDY07515	Canola	endoplasmic reticulum, extracellular, vacuole	50.96	59.15
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	49.21	57.35
CDY56964	Canola	endoplasmic reticulum, extracellular, vacuole	49.39	57.32
AT3G54920.1	Thale cress	extracellular	50.09	57.09
CDY11284	Canola	extracellular, golgi	50.79	56.86
AT5G04310.1	Thale cress	plasma membrane	51.14	56.37
Bra005799.1-P	Field mustard	extracellular, golgi	50.26	56.05
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	51.14	55.73
PGSC0003DMT400040893	Potato	endoplasmic reticulum, vacuole	42.73	55.58
CDY41382	Canola	endoplasmic reticulum, golgi	51.14	55.41
CDY58428	Canola	endoplasmic reticulum, golgi, plastid	49.91	55.34
CDX73426	Canola	endoplasmic reticulum, extracellular, vacuole	49.39	54.55
PGSC0003DMT400076251	Potato	extracellular	41.86	53.35
PGSC0003DMT400051938	Potato	endoplasmic reticulum, extracellular	42.03	52.17
PGSC0003DMT400042395	Potato	extracellular	32.75	49.08
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	33.98	48.87
PGSC0003DMT400083135	Potato	extracellular	36.25	47.59
PGSC0003DMT400002241	Potato	extracellular	36.43	47.38
PGSC0003DMT400017863	Potato	extracellular	35.73	46.15
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	35.03	45.98
PGSC0003DMT400045436	Potato	extracellular	36.6	45.53
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	31.52	45.34
PGSC0003DMT400014085	Potato	extracellular, golgi	31.35	44.97
PGSC0003DMT400014086	Potato	extracellular	35.2	44.97
PGSC0003DMT400003310	Potato	extracellular	34.85	44.62

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:102592779	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016829	GO:GO:0030570
GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	UniProt:M1C5R1	PFAM:PF00544	EnsemblPlantsGene:PGSC0003DMG402023481
PGSC:PGSC0003DMG402023481	EnsemblPlants:PGSC0003DMT400060374	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF11	InterPro:Pec_lyase
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI000295660A
RefSeq:XP_006345995.1	SEG:seg	:	:	:	:

Description

Pectate lyase [Source:PGSC_GENE;Acc:PGSC0003DMG402023481]

Coordinates

chr5:+:51208147..51212194

Molecular Weight (calculated)

62736.9 Da

IEP (calculated)

6.045

GRAVY (calculated)

-0.222

Length

571 amino acids

Sequence
(BLAST)

001: MLSNTIILSF SFFLILSFSS LIIATFNNLT LPHQHPFPES IVQQVNRRIN ESISRRQIFD TTVINYQCLT GNPIDDCWRC DPNWVNNRQQ LADCAIGFGH
101: GAVGGKGGRY YLVSDPSDFD TVNPTPGTLR HAVIQEEPGN PIEDGGRCDP NWVNNRQQLA DCAIGFGHGA VGGKGGRYYL VSDPSDFDTV NPTPGTLRHA
201: VIQEEPLWIT FAGDMIIRLK HELMINNYKT IDGRGANVHV TGGGCITLQY VTNVIIHNIH VYNCVPSGNS NIRQSTTQVG WRGMSDGDGI SIYSSRNIWI
301: DHCAFSHCTD GLIDAIMGST AITISNSYFT HHDKVMLLGH DDRYVPDVGM QVTIAFNHFG EGLVQRMPRC RRGYIHVVNN DFTEWQMYAI GGSANPTINS
401: QGNRFTAPTD PNAKEVTKRV DVDERDWTEW NWRTEGDEMV NGAYFVPSGD GISNQYALAS SMEPKSAFLI DQLTMNAGAI GVPRDTTVAM SFGGRTRTTI
501: TANRSSSVRP SRSNDGDGDF LEKVFGSVAS AGSSTSSPSS STTNILFSLL ILYIITNNVG LLTLPLSLIL Q

Best Arabidopsis Sequence Match ( AT5G04310.3 )
(BLAST)

001: MVAHERRIHN LQKPTCICII WFCLLVSLSH HGRASSTSAS IFNLSLPHQH PFPEHVVLNV QRKLNDSLSR RQLLTYQQDD GTTASSPIPS CITGNPIDDC
101: WRCDPNWSAN RQRLADCSIG FGQGTLGGKG GQFYLVTDSS DNDAANPIPG TLRHAVIQPE PLWIIFSSDM GIKLKHELII GSYKTIDGRG TNIQITGHGC
201: LTIQQVSHVI IHNVHIHHCK PSGNTLVASS PTHVGFRGVS DGDGISVSAS HHIWVDHCSL GYCADGLIDV ILASTAVTIS NNYFSHHDEV MLLGHDDRYT
301: ADKGMQVTIA FNHFGEGLVQ RMPRCRHGYI HVVNNDFTAW EMYAIGGSAS PTINSQGNRY TAPIDPNAKE VTKRVDSNEK HWSGWNWRTE GDVMVNGAFF
401: VPSGDGVSPA YARATSVQPK AAAIIDQLTV NAGVFGDPRY YYQIIYSIAS STQTSIYFIT FIFASILLFD SFNYF

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F4JW80]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.