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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • nucleus 1
  • mitochondrion 3
  • endoplasmic reticulum 1
  • extracellular 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:endoplasmic reticulum, extracellular, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:extracellular
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY11284 Canola extracellular, golgi 88.42 89.8
Bra005799.1-P Field mustard extracellular, golgi 88.03 89.06
CDY58428 Canola endoplasmic reticulum, golgi, plastid 88.22 88.74
CDX70244 Canola vacuole 74.32 87.3
CDY41382 Canola endoplasmic reticulum, golgi 87.45 85.96
Bra009469.1-P Field mustard extracellular, plastid, vacuole 86.29 85.31
Solyc11g008140.1.1 Tomato plasma membrane 57.53 66.37
HORVU5Hr1G005000.2 Barley cytosol 43.24 65.69
VIT_13s0019g04910.t01 Wine grape extracellular 62.55 65.32
PGSC0003DMT400079776 Potato plasma membrane 60.42 63.88
PGSC0003DMT400011046 Potato mitochondrion 35.71 63.57
KRG90767 Soybean extracellular 60.81 62.75
KRH35994 Soybean extracellular 60.23 61.9
Solyc03g071570.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 57.92 59.52
Solyc05g055510.2.1 Tomato plasma membrane 56.56 59.31
AT3G54920.1 Thale cress extracellular 56.56 58.48
AT1G67750.1 Thale cress endoplasmic reticulum, vacuole 45.95 58.33
AT4G24780.1 Thale cress endoplasmic reticulum, extracellular 44.98 57.11
AT3G53190.1 Thale cress extracellular 52.9 56.73
AT3G07010.1 Thale cress endoplasmic reticulum, extracellular, vacuole 44.98 56.01
AT5G48900.1 Thale cress extracellular 44.79 55.64
AT5G63180.1 Thale cress plastid 44.98 53.94
AT3G27400.2 Thale cress endoplasmic reticulum, vacuole 43.05 53.61
AT1G04680.1 Thale cress extracellular 44.59 53.6
AT3G24670.1 Thale cress endoplasmic reticulum, extracellular 44.98 52.95
AT1G11920.1 Thale cress endoplasmic reticulum, extracellular 39.19 52.86
AT4G13210.2 Thale cress endoplasmic reticulum, extracellular 44.4 52.51
PGSC0003DMT400060374 Potato extracellular, plasma membrane, vacuole 56.37 51.14
AT4G13710.1 Thale cress endoplasmic reticulum, extracellular, vacuole 46.14 50.85
AT5G55720.1 Thale cress endoplasmic reticulum, extracellular 38.03 50.26
AT3G24230.1 Thale cress endoplasmic reticulum, golgi, vacuole 43.63 50.0
AT1G30350.1 Thale cress extracellular 34.94 49.18
AT4G22080.1 Thale cress extracellular 37.07 48.73
AT4G22090.1 Thale cress extracellular 36.68 48.22
AT1G14420.1 Thale cress endoplasmic reticulum 38.42 43.36
AT2G02720.1 Thale cress extracellular, vacuole 37.64 42.86
AT5G15110.1 Thale cress endoplasmic reticulum, extracellular 36.68 40.25
AT3G01270.1 Thale cress endoplasmic reticulum, extracellular 36.68 40.0
Protein Annotations
KEGG:00040+4.2.2.2Gene3D:2.160.20.10MapMan:21.3.5.2EntrezGene:830310ProteinID:AED90725.1ProteinID:ANM70240.1
ArrayExpress:AT5G04310EnsemblPlantsGene:AT5G04310RefSeq:AT5G04310TAIR:AT5G04310RefSeq:AT5G04310-TAIR-GEnsemblPlants:AT5G04310.1
TAIR:AT5G04310.1InterPro:AmbAllergenUniProt:F4JW80GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005575GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0016829GO:GO:0030570GO:GO:0031225GO:GO:0045490
GO:GO:0046872InterPro:IPR012334RefSeq:NP_001318478.1RefSeq:NP_196051.2PFAM:PF00544PO:PO:0000084
PO:PO:0000230PO:PO:0000293PO:PO:0004507PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0009005PO:PO:0009009PO:PO:0009025PO:PO:0009029
PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0020030PO:PO:0020100
PO:PO:0020137PO:PO:0025022PRINTS:PR00807PANTHER:PTHR31683PANTHER:PTHR31683:SF11InterPro:Pec_lyase
InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00656SUPFAM:SSF51126SignalP:SignalP-noTMTMHMM:TMhelix
UniParc:UPI000034F2FBSEG:seg::::
Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F4JW80]
Coordinates
chr5:-:1202967..1207946
Molecular Weight (calculated)
56044.1 Da
IEP (calculated)
7.205
GRAVY (calculated)
-0.204
Length
518 amino acids
Sequence
(BLAST)
001: MVAHERRIHN LQKPTCICII WFCLLVSLSH HGRASSTSAS IFNLSLPHQH PFPEHVVLNV QRKLNDSLSR RQLLTYQQDD GTTASSPIPS CITGNPIDDC
101: WRCDPNWSAN RQRLADCSIG FGQGTLGGKG GQFYLVTDSS DNDAANPIPG TLRHAVIQPE PLWIIFSSDM GIKLKHELII GSYKTIDGRG TNIQITGHGC
201: LTIQQVSHVI IHNVHIHHCK PSGNTLVASS PTHVGFRGVS DGDGISVSAS HHIWVDHCSL GYCADGLIDV ILASTAVTIS NNYFSHHDEV MLLGHDDRYT
301: ADKGMQVTIA FNHFGEGLVQ RMPRCRHGYI HVVNNDFTAW EMYAIGGSAS PTINSQGNRY TAPIDPNAKE VTKRVDSNEK HWSGWNWRTE GDVMVNGAFF
401: VPSGDGVSPA YARATSVQPK AAAIIDQLTV NAGVFGDPSG RNGQGGSFPG ITNGGGTITR GYSKSGPAGG GSGSDSDDGL FTLIFGNNSG AVALRPGQVW
501: SILLIIILYW YIPHHTRS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.