Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92652 | Canola | endoplasmic reticulum, extracellular | 93.63 | 94.09 |
| CDY08948 | Canola | endoplasmic reticulum, extracellular | 93.63 | 94.09 |
| CDY11033 | Canola | endoplasmic reticulum, extracellular | 93.38 | 93.84 |
| CDY24847 | Canola | endoplasmic reticulum, extracellular | 93.14 | 93.6 |
| Bra010482.1-P | Field mustard | endoplasmic reticulum, extracellular | 92.89 | 93.35 |
| CDY03419 | Canola | endoplasmic reticulum, extracellular | 92.4 | 92.86 |
| Bra013833.1-P | Field mustard | endoplasmic reticulum, vacuole | 92.16 | 92.61 |
| CDY34310 | Canola | endoplasmic reticulum, vacuole | 92.16 | 92.61 |
| Bra019209.1-P | Field mustard | endoplasmic reticulum, extracellular | 87.01 | 85.34 |
| PGSC0003DMT400039385 | Potato | extracellular | 83.82 | 84.86 |
| Solyc03g111690.2.1 | Tomato | nucleus | 83.09 | 84.12 |
| KRH03893 | Soybean | nucleus | 82.6 | 83.0 |
| KRH57176 | Soybean | nucleus | 82.11 | 82.51 |
| PGSC0003DMT400069632 | Potato | vacuole | 79.41 | 80.0 |
| KRH63675 | Soybean | endoplasmic reticulum, extracellular, vacuole | 79.9 | 79.9 |
| KRH54276 | Soybean | endoplasmic reticulum, golgi, vacuole | 79.17 | 79.17 |
| Solyc06g071840.1.1 | Tomato | vacuole | 69.36 | 78.83 |
| AT1G67750.1 | Thale cress | endoplasmic reticulum, vacuole | 77.94 | 77.94 |
| AT5G63180.1 | Thale cress | plastid | 78.68 | 74.31 |
| AT3G27400.2 | Thale cress | endoplasmic reticulum, vacuole | 72.06 | 70.67 |
| AT5G48900.1 | Thale cress | extracellular | 70.59 | 69.06 |
| AT3G07010.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 70.34 | 68.99 |
| AT1G04680.1 | Thale cress | extracellular | 68.63 | 64.97 |
| AT4G13210.2 | Thale cress | endoplasmic reticulum, extracellular | 69.12 | 64.38 |
| AT3G24670.1 | Thale cress | endoplasmic reticulum, extracellular | 68.38 | 63.41 |
| AT4G13710.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 69.85 | 60.64 |
| AT3G24230.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 62.99 | 56.86 |
| AT5G55720.1 | Thale cress | endoplasmic reticulum, extracellular | 53.92 | 56.12 |
| AT1G11920.1 | Thale cress | endoplasmic reticulum, extracellular | 50.98 | 54.17 |
| AT1G30350.1 | Thale cress | extracellular | 47.3 | 52.45 |
| AT4G22090.1 | Thale cress | extracellular | 50.0 | 51.78 |
| AT4G22080.1 | Thale cress | extracellular | 49.51 | 51.27 |
| AT3G53190.1 | Thale cress | extracellular | 59.31 | 50.1 |
| AT3G54920.1 | Thale cress | extracellular | 57.35 | 46.71 |
| AT3G01270.1 | Thale cress | endoplasmic reticulum, extracellular | 52.7 | 45.26 |
| AT2G02720.1 | Thale cress | extracellular, vacuole | 50.25 | 45.05 |
| AT5G04310.1 | Thale cress | plasma membrane | 57.11 | 44.98 |
| AT5G15110.1 | Thale cress | endoplasmic reticulum, extracellular | 51.96 | 44.92 |
| AT1G14420.1 | Thale cress | endoplasmic reticulum | 50.0 | 44.44 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | EntrezGene:828580 | UniProt:A0A178UYB3 | ProteinID:AAB69761.1 |
| ProteinID:AEE84955.1 | ProteinID:AEE84956.1 | EMBL:AF360140 | ArrayExpress:AT4G24780 | EnsemblPlantsGene:AT4G24780 | RefSeq:AT4G24780 |
| TAIR:AT4G24780 | RefSeq:AT4G24780-TAIR-G | EnsemblPlants:AT4G24780.1 | TAIR:AT4G24780.1 | EMBL:AY087561 | InterPro:AmbAllergen |
| EMBL:BT020489 | ProteinID:CAA22985.1 | ProteinID:CAB79388.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009624 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016829 |
| GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 | RefSeq:NP_001190827.1 | RefSeq:NP_567707.1 |
| ProteinID:OAO99036.1 | PFAM:PF00544 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00807 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF28 |
| InterPro:Pec_lyase | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q5HZ35 | UniProt:Q9C5M8 | SMART:SM00656 |
| SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniParc:UPI0000162B13 | SEG:seg | : | : |
Description
Probable pectate lyase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M8]
Coordinates
chr4:-:12770221..12772438
Molecular Weight (calculated)
45016.4 Da
IEP (calculated)
8.238
GRAVY (calculated)
-0.331
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MKMQTKKLFI TIVSFLLYAP LFLSSPVPDP ESVVEEVHKS INASVAGRRK LGYLSCTTGN PIDDCWRCDP HWEQHRQRLA DCAIGFGKNA IGGRDGRIYV
101: VTDSGNDNPV SPKPGTLRHA VVQDEPLWII FQRDMTIQLK EELIMNSFKT IDGRGASVHI SGGPCITIQY VTNIIIHGIH IHDCKQGGNA MVRSSPRHFG
201: WRTISDGDGV SIFGGSHVWV DHCSFSNCED GLIDAIMGST AITLSNNHMT HHDKVMLLGH SDTYSRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWEMYAI GGSANPTINS QGNRFLAPNI RFSKEVTKHE DAPESEWKRW NWRSSGDLLL NGAFFTPSGG AASSSYAKAS SLGAKPSSLV GPLTSTSGAL
401: NCRKGSRC
101: VTDSGNDNPV SPKPGTLRHA VVQDEPLWII FQRDMTIQLK EELIMNSFKT IDGRGASVHI SGGPCITIQY VTNIIIHGIH IHDCKQGGNA MVRSSPRHFG
201: WRTISDGDGV SIFGGSHVWV DHCSFSNCED GLIDAIMGST AITLSNNHMT HHDKVMLLGH SDTYSRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWEMYAI GGSANPTINS QGNRFLAPNI RFSKEVTKHE DAPESEWKRW NWRSSGDLLL NGAFFTPSGG AASSSYAKAS SLGAKPSSLV GPLTSTSGAL
401: NCRKGSRC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.