Factsheet for Solyc03g111690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 6
plastid 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, extracellular, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039385	Potato	extracellular	97.27	97.27
Solyc06g071840.1.1	Tomato	vacuole	76.18	85.52
CDY08948	Canola	endoplasmic reticulum, extracellular	85.36	84.73
KRH03893	Soybean	nucleus	85.36	84.73
KRH57176	Soybean	nucleus	85.36	84.73
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	84.62	83.99
CDY03419	Canola	endoplasmic reticulum, extracellular	84.62	83.99
KRH63675	Soybean	endoplasmic reticulum, extracellular, vacuole	84.86	83.82
CDY24847	Canola	endoplasmic reticulum, extracellular	84.37	83.74
CDY34310	Canola	endoplasmic reticulum, vacuole	84.37	83.74
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	84.12	83.5
KRH54276	Soybean	endoplasmic reticulum, golgi, vacuole	84.37	83.33
AT4G24780.1	Thale cress	endoplasmic reticulum, extracellular	84.12	83.09
CDY11033	Canola	endoplasmic reticulum, extracellular	83.62	83.0
CDX92652	Canola	endoplasmic reticulum, extracellular	83.37	82.76
Solyc05g014000.2.1	Tomato	extracellular, nucleus	81.64	82.04
Solyc02g093580.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	77.42	77.23
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	78.41	75.96
Solyc09g061890.2.1	Tomato	endoplasmic reticulum, extracellular	70.97	65.15
Solyc06g083580.2.1	Tomato	nucleus	69.73	64.75
Solyc09g091430.2.1	Tomato	nucleus	71.22	63.64
Solyc11g008140.1.1	Tomato	plasma membrane	61.54	55.23
Solyc06g071020.2.1	Tomato	extracellular	56.08	51.95
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	55.09	51.03
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	55.34	50.8
Solyc03g058890.2.1	Tomato	extracellular	55.83	50.11
Solyc02g087670.2.1	Tomato	extracellular	54.84	49.55
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	61.79	49.4
Solyc03g058910.2.1	Tomato	extracellular, golgi	48.39	48.99
Solyc05g055510.2.1	Tomato	plasma membrane	59.55	48.58
Solyc09g008380.2.1	Tomato	nucleus	57.82	48.24
Solyc05g007080.2.1	Tomato	extracellular	53.85	47.59
Solyc02g067450.2.1	Tomato	extracellular	48.39	31.66
Solyc02g080910.2.1	Tomato	extracellular	52.36	27.8

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	UniProt:K4BK32
PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF28	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc03g111690.2	EnsemblPlants:Solyc03g111690.2.1
UniParc:UPI00027690E8	SEG:seg	:	:	:	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4BK32]

Coordinates

chr3:+:62343287..62345438

Molecular Weight (calculated)

44314.5 Da

IEP (calculated)

7.762

GRAVY (calculated)

-0.267

Length

403 amino acids

Sequence
(BLAST)

001: MGTSSVFLLF LLSFLLLLPS LLASSNPQQV VDEVHRSING SRRNLGYLSC GTGNPIDDCW RCDPNWEKNR QRLADCAIGF GKNAIGGRDG KIYVVTDSGD
101: DNAVTPKPGT LRHAVIQTEP LWIIFARDMV IQLKEELIMN SFKTIDGRGA SVHIAGGPCI TIQYVTNIII HGIHIHDCKQ GGNAMVRSSP SHYGWRTVSD
201: GDGVSIFGGS HVWVDHCSLS NCKDGLIDAI MGSTAITISN NYMTHHDKVM LLGHSDTYTQ DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH VVNNDYTHWE
301: MYAIGGSADP TINSQGNRFL APDIRFSKEV TKHEDAPESE WKNWNWRTDG DLMLNGAFFT RSGVRTGSSS YAKASSLSAR PSSLVANLVS SSGALNCKKG
401: SRC

Best Arabidopsis Sequence Match ( AT4G24780.1 )
(BLAST)

001: MKMQTKKLFI TIVSFLLYAP LFLSSPVPDP ESVVEEVHKS INASVAGRRK LGYLSCTTGN PIDDCWRCDP HWEQHRQRLA DCAIGFGKNA IGGRDGRIYV
101: VTDSGNDNPV SPKPGTLRHA VVQDEPLWII FQRDMTIQLK EELIMNSFKT IDGRGASVHI SGGPCITIQY VTNIIIHGIH IHDCKQGGNA MVRSSPRHFG
201: WRTISDGDGV SIFGGSHVWV DHCSFSNCED GLIDAIMGST AITLSNNHMT HHDKVMLLGH SDTYSRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWEMYAI GGSANPTINS QGNRFLAPNI RFSKEVTKHE DAPESEWKRW NWRSSGDLLL NGAFFTPSGG AASSSYAKAS SLGAKPSSLV GPLTSTSGAL
401: NCRKGSRC

Arabidopsis Description

Probable pectate lyase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M8]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.