Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400002241 | Potato | extracellular | 96.13 | 96.13 |
| Solyc05g007080.2.1 | Tomato | extracellular | 71.53 | 68.86 |
| TraesCS4A01G385700.1 | Wheat | cytosol | 30.07 | 60.27 |
| GSMUA_Achr10P... | Banana | cytosol | 47.38 | 60.12 |
| Solyc03g113150.2.1 | Tomato | endoplasmic reticulum, golgi, vacuole | 58.77 | 59.31 |
| Solyc06g071020.2.1 | Tomato | extracellular | 58.09 | 58.62 |
| GSMUA_Achr2P16830_001 | Banana | endoplasmic reticulum, extracellular | 58.31 | 58.45 |
| GSMUA_Achr6P00830_001 | Banana | endoplasmic reticulum, extracellular | 56.49 | 56.75 |
| GSMUA_Achr10P... | Banana | extracellular | 49.66 | 55.9 |
| TraesCS7D01G356700.1 | Wheat | extracellular | 56.49 | 55.86 |
| TraesCS7A01G365700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 56.49 | 55.86 |
| TraesCS7B01G261700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 56.49 | 55.86 |
| Solyc05g014000.2.1 | Tomato | extracellular, nucleus | 50.8 | 55.61 |
| Solyc03g111690.2.1 | Tomato | nucleus | 50.8 | 55.34 |
| Solyc02g087670.2.1 | Tomato | extracellular | 56.04 | 55.16 |
| HORVU7Hr1G085860.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 55.35 | 54.73 |
| Os06t0583900-01 | Rice | plasma membrane | 55.81 | 54.69 |
| Solyc02g093580.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 50.11 | 54.46 |
| EER88571 | Sorghum | endoplasmic reticulum, plasma membrane | 56.26 | 54.41 |
| Zm00001d046389_P007 | Maize | endoplasmic reticulum, extracellular | 53.53 | 54.27 |
| EES06507 | Sorghum | golgi, vacuole | 54.9 | 54.16 |
| Solyc03g058890.2.1 | Tomato | extracellular | 55.35 | 54.12 |
| Zm00001d000216_P001 | Maize | golgi, vacuole | 53.99 | 54.11 |
| HORVU6Hr1G038630.1 | Barley | extracellular | 49.89 | 54.07 |
| OQU75805 | Sorghum | mitochondrion | 53.76 | 53.39 |
| TraesCS7A01G086600.1 | Wheat | endoplasmic reticulum, extracellular | 54.44 | 53.35 |
| Solyc06g071840.1.1 | Tomato | vacuole | 43.05 | 52.65 |
| Os02t0214400-01 | Rice | plasma membrane | 52.85 | 52.02 |
| Solyc03g058910.2.1 | Tomato | extracellular, golgi | 47.15 | 52.01 |
| Os06t0144200-01 | Rice | extracellular, plasma membrane | 53.3 | 52.0 |
| TraesCS6D01G170500.1 | Wheat | golgi | 50.34 | 52.0 |
| Zm00001d036945_P001 | Maize | endoplasmic reticulum | 49.66 | 51.9 |
| TraesCS6B01G211900.1 | Wheat | extracellular, golgi, vacuole | 50.11 | 51.76 |
| Solyc09g061890.2.1 | Tomato | endoplasmic reticulum, extracellular | 51.48 | 51.48 |
| Os06t0144900-01 | Rice | mitochondrion | 53.76 | 49.89 |
| Zm00001d036158_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 51.25 | 49.67 |
| Solyc06g083580.2.1 | Tomato | nucleus | 48.97 | 49.54 |
| EER87830 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 51.48 | 48.6 |
| TraesCS6A01G184500.2 | Wheat | extracellular, golgi, vacuole | 51.03 | 48.38 |
| Solyc09g091430.2.1 | Tomato | nucleus | 49.2 | 47.89 |
| Solyc11g008140.1.1 | Tomato | plasma membrane | 47.84 | 46.77 |
| HORVU7Hr1G019500.1 | Barley | mitochondrion | 53.53 | 45.19 |
| Solyc05g055510.2.1 | Tomato | plasma membrane | 47.38 | 42.11 |
| Solyc09g008380.2.1 | Tomato | nucleus | 46.01 | 41.82 |
| Solyc03g071570.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 47.84 | 41.67 |
| GSMUA_Achr7P08840_001 | Banana | nucleus | 58.54 | 38.36 |
| Solyc02g067450.2.1 | Tomato | extracellular | 51.94 | 37.01 |
| Solyc02g080910.2.1 | Tomato | extracellular | 43.74 | 25.3 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | InterPro:AmbAllergen | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 | UniProt:K4ATR7 |
| PFAM:PF00544 | PFAM:PF04431 | PRINTS:PR00807 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF7 | InterPro:Pec_lyase |
| InterPro:Pec_lyase_N | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00656 | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
| EnsemblPlantsGene:Solyc01g010740.2 | EnsemblPlants:Solyc01g010740.2.1 | TMHMM:TMhelix | UniParc:UPI0002761CFE | SEG:seg | : |
Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4ATR7]
Coordinates
chr1:-:5778009..5781979
Molecular Weight (calculated)
49494.3 Da
IEP (calculated)
8.272
GRAVY (calculated)
-0.330
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFISGNSIL LVLFIWLASL VPHLHARIAE FDPYLEKQAL EALNSSLEAY TNNPEEITNA FNKEVGNALL KYKSLRRHLK EKDKCMATNP IDRCWRCDKN
101: WAENRMDLEE CARGFGHKTT GGKNGKYYVV TDESDDNVQE PKPGTLRHAV IQEEPLWIIF EKSMVIKLRQ ELMITSDKTI DGRGVAVHIA YGAGLMIQFV
201: HNVIIHNIRI QNIISTNGGM IRDSINHIGL RTVSDGDGIS IFGSNHIWID HCTLSECTDG LIDAIMASTA ITISNCKFNY HNDVMLLGAT DAFPQDAIMQ
301: VTVAFNRFGE GLIQRMPRCR WGFFHVVNND YTHWQMYAIG GSAHPTIISQ GNRFKASDNP NTKQVTKRDY ATESEWKKWQ WVSEGDSFLN GAYFVESGPQ
401: DKKKTALTKN HKIKFKPGSH AGRLTRFAGV LKCKPGIPC
101: WAENRMDLEE CARGFGHKTT GGKNGKYYVV TDESDDNVQE PKPGTLRHAV IQEEPLWIIF EKSMVIKLRQ ELMITSDKTI DGRGVAVHIA YGAGLMIQFV
201: HNVIIHNIRI QNIISTNGGM IRDSINHIGL RTVSDGDGIS IFGSNHIWID HCTLSECTDG LIDAIMASTA ITISNCKFNY HNDVMLLGAT DAFPQDAIMQ
301: VTVAFNRFGE GLIQRMPRCR WGFFHVVNND YTHWQMYAIG GSAHPTIISQ GNRFKASDNP NTKQVTKRDY ATESEWKKWQ WVSEGDSFLN GAYFVESGPQ
401: DKKKTALTKN HKIKFKPGSH AGRLTRFAGV LKCKPGIPC
001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
Arabidopsis Description
AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.