Factsheet for Solyc03g071570.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 1
nucleus 1
extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011046	Potato	mitochondrion	53.37	92.44
Solyc11g008140.1.1	Tomato	plasma membrane	62.7	70.38
VIT_13s0019g04910.t01	Wine grape	extracellular	66.27	67.34
HORVU5Hr1G005000.2	Barley	cytosol	45.04	66.57
KRG90767	Soybean	extracellular	65.87	66.14
Solyc05g055510.2.1	Tomato	plasma membrane	64.48	65.79
KRH35994	Soybean	extracellular	65.48	65.48
Solyc03g111690.2.1	Tomato	nucleus	49.4	61.79
CDX70244	Canola	vacuole	53.97	61.68
CDY07515	Canola	endoplasmic reticulum, extracellular, vacuole	59.13	60.57
Solyc05g014000.2.1	Tomato	extracellular, nucleus	48.02	60.35
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	58.73	60.29
CDX67615	Canola	endoplasmic reticulum, extracellular, vacuole	58.53	60.08
Solyc02g093580.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	47.82	59.65
Solyc06g071840.1.1	Tomato	vacuole	42.46	59.61
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	57.34	58.98
CDY56964	Canola	endoplasmic reticulum, extracellular, vacuole	57.54	58.94
AT3G54920.1	Thale cress	extracellular	57.74	58.08
CDY11284	Canola	extracellular, golgi	58.73	58.04
Solyc09g008380.2.1	Tomato	nucleus	55.56	57.97
AT5G04310.1	Thale cress	plasma membrane	59.52	57.92
Bra005799.1-P	Field mustard	extracellular, golgi	58.33	57.42
CDY41382	Canola	endoplasmic reticulum, golgi	59.52	56.93
CDY58428	Canola	endoplasmic reticulum, golgi, plastid	58.13	56.89
CDX73426	Canola	endoplasmic reticulum, extracellular, vacuole	57.74	56.29
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	58.33	56.11
Solyc09g061890.2.1	Tomato	endoplasmic reticulum, extracellular	47.82	54.9
Solyc06g083580.2.1	Tomato	nucleus	47.22	54.84
Solyc09g091430.2.1	Tomato	nucleus	48.41	54.1
Solyc06g071020.2.1	Tomato	extracellular	42.26	48.97
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	41.87	48.51
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	41.67	47.84
Solyc03g058910.2.1	Tomato	extracellular, golgi	36.51	46.23
Solyc03g058890.2.1	Tomato	extracellular	40.87	45.88
Solyc02g087670.2.1	Tomato	extracellular	39.68	44.84
Solyc05g007080.2.1	Tomato	extracellular	39.68	43.86
Solyc02g067450.2.1	Tomato	extracellular	37.3	30.52
Solyc02g080910.2.1	Tomato	extracellular	41.07	27.27

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:K4BHI7	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF11	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
EnsemblPlantsGene:Solyc03g071570.2	EnsemblPlants:Solyc03g071570.2.1	TMHMM:TMhelix	UniParc:UPI0002767BCA	SEG:seg	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4BHI7]

Coordinates

chr3:-:18202566..18206729

Molecular Weight (calculated)

55522.8 Da

IEP (calculated)

6.736

GRAVY (calculated)

-0.217

Length

504 amino acids

Sequence
(BLAST)

001: MSSQSLFYRA KMPPATPILL FIYLILSFFS PLIDSQLNLT LPNQHPYPES VVHQLHRRVN ESRLLFQTIV RDSKCHSTGN PIDDCWQCDP NWAKDRQRLA
101: DCSIGFGQSA MGGKGGQIYV VRDSSDRDTV NPIPGTLRHA VVQEEPLWIV FAADMVIKLK HELIINNYKT IDGRGANVHI TGNGCITLQY VSHVIIHNVH
201: IYNCVPSGNT NIRSSPTHVG WRGKSDGDGI SIFGSHNIWI DHCALSHCTD GLIDAIMGST AITISNNYFS HHDDVMLLGH DDKYLPDSGM QVTIAFNHFG
301: EGLVQRMPRI RRGYVHVVNN DFTHWQMYAI GGSANPTINS QGNRYTAPDD PNLKEVTKRE DTDNGQWDEW NWRTDGDTMV NGAFFVPSGQ GLSNQYTKAY
401: SVDPKSALLI NQLTANAGVL GGPRDNSISI LPQVGGGTSE GSGRGHDQSN SGSVDLFGMI FSGTGASAAA PPTTTPILFS FFILLTLYII TITTQLSKPF
501: LHLL

Best Arabidopsis Sequence Match ( AT5G04310.2 )
(BLAST)

001: MVAHERRIHN LQKPTCICII WFCLLVSLSH HGRASSTSAS IFNLSLPHQH PFPEHVVLNV QRKLNDSLSR RQLLTYQQDD GTTASSPIPS CITGNPIDDC
101: WRCDPNWSAN RQRLADCSIG FGQGTLGGKG GQFYLVTDSS DNDAANPIPG TLRHAVIQPE PLWIIFSSDM GIKLKHELII GSYKTIDGRG TNIQITGHGC
201: LTIQQVSHVI IHNVHIHHCK PSGNTLVASS PTHVGFRGVS DGDGISVSAS HHIWVDHCSL GYCADGLIDV ILASTAVTIS NNYFSHHDEV MLLGHDDRYT
301: ADKGMQVTIA FNHFGEGLVQ RMPRCRHGYI HVVNNDFTAW EMYAIGGSAS PTINSQGNRY TAPIDPNAKE VTKRVDSNEK HWSGWNWRTE GDVMVNGAFF
401: VPSGDGVSPA YARATSVQPK AAAIIDQLTV NAGVFGDPSG RNGQGGSFPG ITNGGGTITR GYSKSGPAGG GSGSDSDDGL FTLIFGNNSG AVALRPGQVW
501: SILLIIILYW YIPHHTRS

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F4JW80]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.