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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 9
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 5
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:extracellular
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400003310 Potato extracellular 97.09 97.09
Solyc03g058890.2.1 Tomato extracellular 72.2 71.71
GSMUA_Achr6P00830_001 Banana endoplasmic reticulum, extracellular 61.66 62.93
VIT_14s0108g00030.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 61.66 62.64
VIT_01s0026g01670.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 61.44 61.85
GSMUA_Achr2P16830_001 Banana endoplasmic reticulum, extracellular 60.31 61.42
GSMUA_Achr10P... Banana extracellular 53.14 60.77
TraesCS4A01G385700.1 Wheat cytosol 29.82 60.73
Solyc06g071020.2.1 Tomato extracellular 58.97 60.46
Solyc03g113150.2.1 Tomato endoplasmic reticulum, golgi, vacuole 58.3 59.77
GSMUA_Achr10P... Banana cytosol 45.52 58.67
VIT_01s0026g01680.t01 Wine grape endoplasmic reticulum, extracellular 58.07 58.47
Os02t0214400-01 Rice plasma membrane 56.73 56.73
TraesCS7A01G365700.1 Wheat endoplasmic reticulum, extracellular, vacuole 56.05 56.31
HORVU6Hr1G038630.1 Barley extracellular 51.12 56.3
KRH01130 Soybean extracellular 55.38 56.14
KRH45851 Soybean extracellular 56.73 56.1
TraesCS7D01G356700.1 Wheat extracellular 55.83 56.08
Solyc01g010740.2.1 Tomato endoplasmic reticulum, extracellular 55.16 56.04
Solyc05g014000.2.1 Tomato extracellular, nucleus 50.22 55.86
HORVU7Hr1G085860.1 Barley endoplasmic reticulum, extracellular, vacuole 55.61 55.86
KRH69345 Soybean extracellular 55.83 55.7
Zm00001d046389_P007 Maize endoplasmic reticulum, extracellular 54.04 55.66
KRH74782 Soybean extracellular 55.83 55.58
Solyc03g058910.2.1 Tomato extracellular, golgi 49.55 55.53
TraesCS7B01G261700.1 Wheat endoplasmic reticulum, extracellular, vacuole 55.16 55.41
KRH18498 Soybean endoplasmic reticulum, extracellular, vacuole 54.93 55.3
Os06t0583900-01 Rice plasma membrane 55.16 54.91
Solyc03g111690.2.1 Tomato nucleus 49.55 54.84
EES06507 Sorghum golgi, vacuole 54.48 54.61
OQU75805 Sorghum mitochondrion 54.04 54.52
AT1G14420.1 Thale cress endoplasmic reticulum 55.83 54.25
KRG93502 Soybean extracellular 53.81 54.18
Zm00001d000216_P001 Maize golgi, vacuole 52.91 53.88
Bra026832.1-P Field mustard extracellular 54.48 53.76
Bra024811.1-P Field mustard extracellular 55.16 53.59
CDY04133 Canola extracellular 55.16 53.59
CDY45202 Canola extracellular 55.16 53.59
Os06t0144200-01 Rice extracellular, plasma membrane 54.04 53.56
Bra017412.1-P Field mustard extracellular 54.93 53.38
CDY03043 Canola extracellular 54.93 53.38
EER88571 Sorghum endoplasmic reticulum, plasma membrane 54.26 53.3
CDY68729 Canola endoplasmic reticulum, extracellular, plasma membrane 54.48 53.06
AT5G15110.1 Thale cress endoplasmic reticulum, extracellular 56.05 52.97
Bra026583.1-P Field mustard endoplasmic reticulum, plasma membrane 54.26 52.95
TraesCS7A01G086600.1 Wheat endoplasmic reticulum, extracellular 53.14 52.9
CDY28691 Canola endoplasmic reticulum, extracellular, vacuole 55.61 52.88
Bra016700.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 54.26 52.84
CDX96854 Canola endoplasmic reticulum, extracellular, plasma membrane 54.26 52.84
CDY17432 Canola extracellular 54.26 52.72
CDX74293 Canola endoplasmic reticulum, extracellular 55.61 52.65
CDX91953 Canola endoplasmic reticulum, extracellular 55.61 52.65
CDX78607 Canola endoplasmic reticulum, extracellular 56.05 52.63
Bra006279.1-P Field mustard endoplasmic reticulum, extracellular 56.05 52.63
Solyc02g093580.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 47.53 52.48
CDX70590 Canola endoplasmic reticulum, extracellular 55.83 52.42
Solyc06g071840.1.1 Tomato vacuole 42.15 52.37
TraesCS6B01G211900.1 Wheat extracellular, golgi, vacuole 49.78 52.24
AT3G01270.1 Thale cress endoplasmic reticulum, extracellular 55.61 52.21
Bra001011.1-P Field mustard endoplasmic reticulum, extracellular 54.93 52.02
CDX85564 Canola extracellular 55.16 52.01
TraesCS6D01G170500.1 Wheat golgi 49.55 52.0
Zm00001d036158_P001 Maize endoplasmic reticulum, extracellular, vacuole 52.69 51.88
AT2G02720.1 Thale cress extracellular, vacuole 52.69 51.65
CDX69550 Canola endoplasmic reticulum, extracellular 57.62 51.5
CDY66593 Canola endoplasmic reticulum, extracellular 57.62 51.5
Bra008721.1-P Field mustard endoplasmic reticulum, extracellular 57.62 51.5
EER87830 Sorghum endoplasmic reticulum, extracellular, vacuole 53.59 51.4
Bra023504.1-P Field mustard extracellular 55.38 51.35
Solyc05g007080.2.1 Tomato extracellular 52.47 51.32
Bra026221.1-P Field mustard endoplasmic reticulum 52.69 51.31
CDY63769 Canola extracellular 54.93 51.15
CDY39314 Canola extracellular 52.47 50.98
Os06t0144900-01 Rice mitochondrion 53.59 50.53
Solyc09g061890.2.1 Tomato endoplasmic reticulum, extracellular 49.1 49.89
Zm00001d036945_P001 Maize endoplasmic reticulum 46.86 49.76
CDX81636 Canola endoplasmic reticulum 53.81 49.59
Solyc06g083580.2.1 Tomato nucleus 48.21 49.54
CDY53552 Canola extracellular 54.04 48.69
TraesCS6A01G184500.2 Wheat extracellular, golgi, vacuole 50.45 48.6
Solyc09g091430.2.1 Tomato nucleus 48.88 48.34
HORVU7Hr1G019500.1 Barley mitochondrion 53.59 45.96
Solyc11g008140.1.1 Tomato plasma membrane 45.74 45.43
Solyc09g008380.2.1 Tomato nucleus 46.86 43.27
Solyc05g055510.2.1 Tomato plasma membrane 44.39 40.08
Solyc03g071570.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 44.84 39.68
Solyc02g067450.2.1 Tomato extracellular 54.71 39.61
GSMUA_Achr7P08840_001 Banana nucleus 59.42 39.55
Solyc02g080910.2.1 Tomato extracellular 40.81 23.98
CDY04136 Canola mitochondrion, nucleus 0.45 1.32
Protein Annotations
KEGG:00040+4.2.2.2Gene3D:2.160.20.10MapMan:21.3.5.2InterPro:AmbAllergenGO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005575GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009056
GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016829GO:GO:0030570GO:GO:0045490
GO:GO:0046872InterPro:IPR012334UniProt:K4BBS3PFAM:PF00544PFAM:PF04431PRINTS:PR00807
PANTHER:PTHR31683PANTHER:PTHR31683:SF7InterPro:Pec_lyaseInterPro:Pec_lyase_NInterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulence
SMART:SM00656SUPFAM:SSF51126SignalP:SignalP-noTMEnsemblPlantsGene:Solyc02g087670.2EnsemblPlants:Solyc02g087670.2.1TMHMM:TMhelix
UniParc:UPI0002768118SEG:seg::::
Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4BBS3]
Coordinates
chr2:+:50023499..50025492
Molecular Weight (calculated)
49797.2 Da
IEP (calculated)
7.380
GRAVY (calculated)
-0.329
Length
446 amino acids
Sequence
(BLAST)
001: MGGTKLVYLS LLLFSTFLVI NGHIGEFDEV WRRRAQEADE WAIKAYKPDP INVTLAFAKE TGQALKEIKE AKLAVNGTRR ELKGGGKKYD GPCSVTNPID
101: RCWRCQPDWA DNRKRLADCA MGFAKGTTGG KAGEIYVVTD SSDDTSDPKP GTLRYGVIQK EPLWIIFAKS MTIRLHQELI VQSDKTIDGR GVNVHIANGA
201: GFMLQYVKNV IIHGLRIHDI VVGSGGMIRD AMDHVGQRTQ SDGDGISIFG SSNIWVDHVS MWSCYDGLVD AIEGSTAVTI SNSHFTDHNE VMLFGASDSS
301: SIDQRMQITV AYNHFGKRLI QRMPRCRWGF IHVVNNDYTH WNMYAIGGSQ HPTIISQGNR FIAPPDMFKK EVTKRDYSPE SVWKQWSWRS QGDLFMNGAF
401: FVESGDPDWT QKHIQLFDGV VSASGDQVTW ITRFSGALNC KPGEAC
Best Arabidopsis Sequence Match ( AT5G15110.1 )
(BLAST)
001: MEMVRLSKLM FTFCIAVLIP TIRGNISELD EYWSQRADEA REFTLQAYHS DPYEIVDHFH ERHYDNSTDV TTPEEDGDAK PEEEEKEFIE MLGSSTNSTR
101: RSLRGKGKGK WSKLKGPCTA SNPIDKCWRC RSDWAKRRKK LTRCVRGFGH RTTGGKRGRI YVVTSNLDED MVNPKPGTLR HAVIQKEPLW IIFKNDMSIR
201: LNQELLINSH KTIDARGANV HVAHGAGITM QFVKNVVIHG LHIHHISESS GGMIRDSVDH FGMRTRADGD GLSIYGSSNI WLDHISMSKC QDGLIDAIVG
301: STGITISNSH FTHHNDVMLL GAQNTNEADK HMQVTVAYNH FGKGLVQRMP RIRWGFVHVV NNDYTHWELY AIGGSQGPTI LSHGNRFIAP PHKPHYREVT
401: KRDYASEDEW KHWNWRSDKD VFMNGAYFRQ SGNPQYKCAH TRQQMIKPKN GLAVSKLTKY AGALDCRVGR RC
Arabidopsis Description
Pectate lyase family protein [Source:TAIR;Acc:AT5G15110]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.