Factsheet for Solyc02g080910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042395	Potato	extracellular	48.75	97.11
KRH11474	Soybean	extracellular	33.47	68.1
VIT_10s0116g01160.t01	Wine grape	endoplasmic reticulum, extracellular	33.86	67.45
KRH36488	Soybean	extracellular	35.05	67.0
KRH02031	Soybean	extracellular	33.47	63.82
KRH36487	Soybean	extracellular	23.58	62.81
Solyc05g014000.2.1	Tomato	extracellular, nucleus	28.99	54.86
Solyc06g071840.1.1	Tomato	vacuole	25.03	52.92
Solyc02g093580.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	28.06	52.72
Solyc03g111690.2.1	Tomato	nucleus	27.8	52.36
Solyc09g061890.2.1	Tomato	endoplasmic reticulum, extracellular	27.67	47.84
Solyc06g083580.2.1	Tomato	nucleus	25.96	45.39
Solyc09g091430.2.1	Tomato	nucleus	26.75	45.01
Solyc11g008140.1.1	Tomato	plasma membrane	26.48	44.77
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	25.3	43.74
Solyc03g058910.2.1	Tomato	extracellular, golgi	22.13	42.21
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	23.98	41.84
Solyc06g071020.2.1	Tomato	extracellular	23.72	41.38
CDY09356	Canola	extracellular	24.9	41.36
Solyc05g007080.2.1	Tomato	extracellular	24.77	41.23
Solyc03g058890.2.1	Tomato	extracellular	24.37	41.2
CDY41679	Canola	endoplasmic reticulum, plasma membrane	24.77	41.14
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	27.27	41.07
Solyc02g087670.2.1	Tomato	extracellular	23.98	40.81
CDY45254	Canola	endoplasmic reticulum	24.37	40.39
Solyc05g055510.2.1	Tomato	plasma membrane	26.22	40.28
Solyc09g008380.2.1	Tomato	nucleus	25.16	39.54
Solyc02g067450.2.1	Tomato	extracellular	21.87	26.95
CDX81635	Canola	mitochondrion, nucleus	1.98	9.87
CDY66531	Canola	mitochondrion, nucleus	1.98	9.87
CDY53553	Canola	mitochondrion, nucleus	1.98	9.87
CDY45253	Canola	mitochondrion, nucleus	1.98	9.87
CDX96858	Canola	mitochondrion, nucleus	1.98	9.87
CDY45199	Canola	mitochondrion, nucleus	1.84	9.21
CDY41678	Canola	mitochondrion, nucleus	1.84	9.21
CDY09355	Canola	mitochondrion, nucleus	1.84	9.21
CDY70492	Canola	endoplasmic reticulum, extracellular	0.4	5.45

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	UniProt:K4B9W1
PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF18	InterPro:PbH1	InterPro:Pec_lyase
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc02g080910.2	EnsemblPlants:Solyc02g080910.2.1	UniParc:UPI0002769215	SEG:seg	:	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4B9W1]

Coordinates

chr2:-:45010413..45015714

Molecular Weight (calculated)

84427.1 Da

IEP (calculated)

8.731

GRAVY (calculated)

-0.364

Length

759 amino acids

Sequence
(BLAST)

001: MASLALVLAL LFLCISTLQA EYYAPSKNYY APSTTKKTMN VIDSCWRAKS NWAKNRYALA DCAVGYGKAA IGGKNGAIYV VTNPSDDPVN PKPGTLRYGV
101: IQSKPLWIIF NKDMVITLKN ELMINSYKTI DGRGAKVEIA YGPCITIQRV SHVIIHGISI HDCKPGKRGI VRDSPVHAGH RNGADGDGID IFQSTHVWID
201: HCYLARCTDG LIDVIHASTG VTISNNYFTQ HDKVMLFGHN DNNKEDKIMK VTVAFNYFGP GLIERMPRVR LGYAHVANNR YEKWLMYAIG GSANPTIFSE
301: GNYFLASKST QVTKRESKNG WQNWKWRSSK DKFLNGAYFI PSGYGTTNPY YSKAQSFPVA DGSMVPSLTA DAGPLRCTSY KSSKSSDKDE TKSLHDFFPS
401: YDPQPHKNGL LNVIDSCWRW KGDWSSNRKA LADCAIGFGS STIGGKYGDI YIVNDSSDDP INPKPGTLRY GAIQSEPLWI IFKRDMVLTL ENELMVNSYK
501: TIDGRGAKVE ISNGPCITLD YVTNVIIHGI SIHDCKPGKK GMVRSSPEHV GERSGSDGDA ISVFTSSNVW IDHCYLARAT DGLLDVIHAS TAVTISNNYF
601: TEHDKVMLLG HNDEYTADRN MKVTVVYNHF GRELVQRMPR VRHGYAHVAN NYYDQWLMYA IGGSADPTIF SEGNYFIAPD KAYNKEVTKR ETEEKGWKSW
701: KWRSSNDMFM NGAYFLPSGY GSIAPKYTRG QSFIVAHGAF TPSLTSNAGP LQCVVNEPC

Best Arabidopsis Sequence Match ( AT4G22080.1 )
(BLAST)

001: MTLFTVSCLL VVLFLCHSLV HAENNGYYGY TPTVANYLPE KPQNIMNPVD SCWRLKSDWA ANRKDLADCV VGFGSSTLGG KKGNLYVVTN PYDNAQNPQP
101: GSLRYGVIQA KPLWITFAKD MVITLENELM VNSYKTIDGR GAKVEIAYGP CITIQDVTNV IVHGISIHDC KPGKYGMVRS SPTHVGHRKG SDGDAIAIFG
201: SSNIWIDHCY LASCTDGLID VIHASTGITI SNNYFTQHDK VMLLGHNDDF VQDVKMKVTV AFNHFGPGLV ERMPRVRRGY AHVANNRYDK WIMYAIGGSA
301: DPTIFSEGNY FIASDKSNSK EVTKREVKGG WNNWRWRTSK DVFKNGAYFV PSGYGSISLP YSSAQRFTVA PGNLVPSLTA DAGPLNCNRN GPCY

Arabidopsis Description

RHS14Probable pectate lyase 16 [Source:UniProtKB/Swiss-Prot;Acc:O65456]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.