CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04136	Canola	mitochondrion, nucleus	100.0	100.0
CDY41678	Canola	mitochondrion, nucleus	100.0	100.0
CDY45199	Canola	mitochondrion, nucleus	100.0	100.0
CDX81635	Canola	mitochondrion, nucleus	98.68	98.68
CDX96858	Canola	mitochondrion, nucleus	98.68	98.68
CDY53553	Canola	mitochondrion, nucleus	98.68	98.68
CDY66531	Canola	mitochondrion, nucleus	98.68	98.68
CDY45253	Canola	mitochondrion, nucleus	96.71	96.71
CDX73426	Canola	endoplasmic reticulum, extracellular, vacuole	7.89	2.32
CDY56964	Canola	endoplasmic reticulum, extracellular, vacuole	7.24	2.24
CDX67615	Canola	endoplasmic reticulum, extracellular, vacuole	6.58	2.04
CDY53552	Canola	extracellular	6.58	2.02
Solyc02g080910.2.1	Tomato	extracellular	9.21	1.84
CDY07515	Canola	endoplasmic reticulum, extracellular, vacuole	5.92	1.83
CDY11284	Canola	extracellular, golgi	5.92	1.76
CDY58428	Canola	endoplasmic reticulum, golgi, plastid	5.92	1.75
CDY41382	Canola	endoplasmic reticulum, golgi	5.92	1.71
CDX73573	Canola	extracellular	3.95	1.26
CDX78152	Canola	extracellular	3.95	1.26
CDX81636	Canola	endoplasmic reticulum	3.29	1.03
CDX67560	Canola	plasma membrane	3.29	1.02
CDY13312	Canola	plasma membrane	3.29	0.93
CDX92652	Canola	endoplasmic reticulum, extracellular	1.97	0.74
CDY01846	Canola	endoplasmic reticulum, extracellular, vacuole	1.97	0.74
CDY03419	Canola	endoplasmic reticulum, extracellular	1.97	0.74
CDY08948	Canola	endoplasmic reticulum, extracellular	1.97	0.74
CDY11033	Canola	endoplasmic reticulum, extracellular	1.97	0.74
CDY12666	Canola	extracellular	1.97	0.74
CDY24847	Canola	endoplasmic reticulum, extracellular	1.97	0.74
CDY32557	Canola	extracellular	1.97	0.74
CDY34310	Canola	endoplasmic reticulum, vacuole	1.97	0.74
CDY56220	Canola	endoplasmic reticulum, extracellular, vacuole	1.97	0.74
CDY28857	Canola	extracellular	1.97	0.74
CDY56520	Canola	extracellular	1.97	0.74
CDY41506	Canola	endoplasmic reticulum, extracellular, vacuole	1.97	0.73
CDY16732	Canola	endoplasmic reticulum, golgi	1.97	0.7
CDY48132	Canola	endoplasmic reticulum, golgi	1.97	0.7
CDX86615	Canola	endoplasmic reticulum, extracellular, golgi	1.97	0.7
CDY65626	Canola	golgi	1.97	0.66
CDX77400	Canola	endoplasmic reticulum, extracellular	1.97	0.61
CDX98092	Canola	extracellular	1.32	0.56
CDY30040	Canola	extracellular	1.32	0.56
CDY34149	Canola	extracellular	1.32	0.56
CDX98091	Canola	extracellular	1.32	0.54
CDY30041	Canola	extracellular	1.32	0.54
KRH11474	Soybean	extracellular	1.32	0.54
KRH02031	Soybean	extracellular	1.32	0.5
CDY00156	Canola	extracellular, plastid	1.32	0.49
CDY03964	Canola	extracellular	1.32	0.49
CDY20049	Canola	plastid, vacuole	1.32	0.49
CDY05305	Canola	endoplasmic reticulum, extracellular, vacuole	1.32	0.48
CDY24654	Canola	endoplasmic reticulum, extracellular, vacuole	1.32	0.48
CDY05655	Canola	extracellular	1.32	0.48
CDY33938	Canola	extracellular	1.32	0.48
CDY19932	Canola	extracellular	1.32	0.48
CDY56668	Canola	extracellular	1.32	0.48
CDX89799	Canola	extracellular	1.32	0.46
CDY15517	Canola	endoplasmic reticulum, extracellular, golgi	1.32	0.46
CDY61137	Canola	extracellular	1.32	0.46
CDY47327	Canola	endoplasmic reticulum, extracellular	1.32	0.46
CDY01119	Canola	endoplasmic reticulum, extracellular	1.32	0.46
CDY46471	Canola	endoplasmic reticulum, extracellular	1.32	0.46
CDY66697	Canola	endoplasmic reticulum, golgi	1.32	0.45
CDY01151	Canola	endoplasmic reticulum, extracellular, vacuole	1.32	0.44
CDY53564	Canola	endoplasmic reticulum, extracellular, vacuole	1.32	0.44
CDY09356	Canola	extracellular	1.32	0.44
CDY41679	Canola	endoplasmic reticulum, plasma membrane	1.32	0.44
CDX96854	Canola	endoplasmic reticulum, extracellular, plasma membrane	1.32	0.44
CDY45254	Canola	endoplasmic reticulum	1.32	0.44
CDY68729	Canola	endoplasmic reticulum, extracellular, plasma membrane	1.32	0.44
CDX77470	Canola	golgi, plasma membrane	1.32	0.44
CDY03043	Canola	extracellular	1.32	0.44
CDY04133	Canola	extracellular	1.32	0.44
CDY17432	Canola	extracellular	1.32	0.44
CDY39314	Canola	extracellular	1.32	0.44
CDY45202	Canola	extracellular	1.32	0.44
CDY28691	Canola	endoplasmic reticulum, extracellular, vacuole	1.32	0.43
CDX74293	Canola	endoplasmic reticulum, extracellular	1.32	0.42
CDX91953	Canola	endoplasmic reticulum, extracellular	1.32	0.42
CDX85564	Canola	extracellular	1.32	0.42
CDX70590	Canola	endoplasmic reticulum, extracellular	1.32	0.42
CDX78607	Canola	endoplasmic reticulum, extracellular	1.32	0.42
CDY18738	Canola	endoplasmic reticulum, extracellular	1.32	0.42
CDY63769	Canola	extracellular	1.32	0.42
CDX69550	Canola	endoplasmic reticulum, extracellular	1.32	0.4
CDY66593	Canola	endoplasmic reticulum, extracellular	1.32	0.4
VIT_10s0116g01160.t01	Wine grape	endoplasmic reticulum, extracellular	0.66	0.26
CDY06557	Canola	extracellular	0.66	0.26
CDY20748	Canola	extracellular	0.66	0.26
KRH36488	Soybean	extracellular	0.66	0.25
CDX79122	Canola	extracellular	0.66	0.25
CDX76388	Canola	extracellular	0.66	0.25
CDY27438	Canola	extracellular	0.66	0.25
CDX83690	Canola	endoplasmic reticulum, extracellular, vacuole	0.66	0.24
CDX70244	Canola	vacuole	0.0	0.0
CDX82902	Canola	endoplasmic reticulum, extracellular, vacuole	0.0	0.0
CDY18330	Canola	cytosol	0.0	0.0
CDY70492	Canola	endoplasmic reticulum, extracellular	0.0	0.0
CDY70583	Canola	cytosol	0.0	0.0
KRH36487	Soybean	extracellular	0.0	0.0
PGSC0003DMT400042395	Potato	extracellular	0.0	0.0

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	GO:A0A078F4C8	UniProt:A0A078F4C8	EnsemblPlants:CDY09355	ProteinID:CDY09355
ProteinID:CDY09355.1	ProteinID:CDY41678.1	ProteinID:CDY45199.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00030816001	InterPro:IPR000608	InterPro:IPR016135
PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43898	PANTHER:PTHR43898:SF5	MetaCyc:PWY-7511
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143
UniParc:UPI0000000ABD	SEG:seg	:	:	:	:

Description

BnaA02g26550DBnaA02g26550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4C8]

Coordinates

chrLK031995:-:186308..187869

Molecular Weight (calculated)

17280.3 Da

IEP (calculated)

5.196

GRAVY (calculated)

-0.562

Length

152 amino acids

Sequence
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SESKREYNRR VREVVEQSWT AD

Best Arabidopsis Sequence Match ( AT2G02760.3 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SESKREYNRR VREVVEQSWT AD

Arabidopsis Description

UBC2UBC2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0U6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.