Factsheet for PGSC0003DMT400042395

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11474	Soybean	extracellular	65.62	67.02
KRH36488	Soybean	extracellular	69.55	66.75
VIT_10s0116g01160.t01	Wine grape	endoplasmic reticulum, extracellular	66.4	66.4
KRH02031	Soybean	extracellular	65.88	63.07
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	65.35	62.72
KRH36487	Soybean	extracellular	46.46	62.11
PGSC0003DMT400027955	Potato	extracellular	57.48	54.61
PGSC0003DMT400069632	Potato	vacuole	56.69	53.33
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	55.64	52.61
PGSC0003DMT400039385	Potato	extracellular	55.38	52.36
Solyc02g080910.2.1	Tomato	extracellular	97.11	48.75
PGSC0003DMT400040893	Potato	endoplasmic reticulum, vacuole	54.86	47.61
PGSC0003DMT400076251	Potato	extracellular	53.02	45.09
PGSC0003DMT400051938	Potato	endoplasmic reticulum, extracellular	52.49	43.48
PGSC0003DMT400011046	Potato	mitochondrion	33.07	43.3
PGSC0003DMT400002241	Potato	extracellular	49.61	43.05
PGSC0003DMT400009869	Potato	cytosol	47.77	42.72
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	43.31	41.56
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	47.24	41.38
PGSC0003DMT400014085	Potato	extracellular, golgi	43.04	41.21
CDY09356	Canola	extracellular	48.82	40.7
PGSC0003DMT400083135	Potato	extracellular	46.46	40.69
PGSC0003DMT400079776	Potato	plasma membrane	52.23	40.61
CDY41679	Canola	endoplasmic reticulum, plasma membrane	48.56	40.48
PGSC0003DMT400014086	Potato	extracellular	47.24	40.27
PGSC0003DMT400003310	Potato	extracellular	46.72	39.91
PGSC0003DMT400045436	Potato	extracellular	48.03	39.87
CDY45254	Canola	endoplasmic reticulum	47.77	39.74
PGSC0003DMT400017863	Potato	extracellular	44.62	38.46
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	49.08	32.75
CDY70492	Canola	endoplasmic reticulum, extracellular	1.05	7.27
CDY09355	Canola	mitochondrion, nucleus	0.0	0.0
CDX96858	Canola	mitochondrion, nucleus	0.0	0.0
CDY41678	Canola	mitochondrion, nucleus	0.0	0.0
CDY45199	Canola	mitochondrion, nucleus	0.0	0.0
CDY45253	Canola	mitochondrion, nucleus	0.0	0.0
CDY53553	Canola	mitochondrion, nucleus	0.0	0.0
CDY66531	Canola	mitochondrion, nucleus	0.0	0.0
CDX81635	Canola	mitochondrion, nucleus	0.0	0.0

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:102600354	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334
UniProt:M1BCY8	PFAM:PF00544	EnsemblPlantsGene:PGSC0003DMG400016439	PGSC:PGSC0003DMG400016439	EnsemblPlants:PGSC0003DMT400042395	PRINTS:PR00807
PANTHER:PTHR31683	PANTHER:PTHR31683:SF18	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656
SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI00029536D8	RefSeq:XP_006348207.1	SEG:seg	:

Description

Pectate lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400016439]

Coordinates

chr2:-:36625050..36627747

Molecular Weight (calculated)

42101.3 Da

IEP (calculated)

9.257

GRAVY (calculated)

-0.267

Length

381 amino acids

Sequence
(BLAST)

001: MASLALVLTL LLLGISTLQA EYYAPSKNYA PSTTKKTMNV IDSCWRAKSN WDKNRYALAD CAVGYGKAAI GGKNGAIYVV TNPSDDPVNP KPGTLRYGAI
101: QSKPLWIIFN KDMVITLKNE LMINSYKTID GRGAEVEIAY GPCITIQHVS HVIIHGISIH DCKPGKKGIV RDSPVHAGHR NGADGDGIDI FQSTHVWIDH
201: CYLARCTDGL IDVIHASTGV TISNNYFTQH DKVMLFGHND NNIEDKVMKV TVAFNYFGPG LIERMPRVRL GYAHVANNRY EKWLMYAIGG SANPTIFSEG
301: NYFLASKSTQ VTKRESKNGW QNWKWRSSKD KFLNGAYFIP SGYGTTNPYY SKAQSFPVAD GSMVPSLTAD AGPLRCTSYK C

Best Arabidopsis Sequence Match ( AT1G11920.1 )
(BLAST)

001: MASLFLTIIS LLFAAFSSSV VEAAYSNGYT IPKLLPNPID SCWRRNPYWA SNRRALADCA VGFGKSAVGG KYGSIYVVTN PSDDPENPRP GTLRYAVIQS
101: KPLWITFARD MVIVLRNELI MNSYKTIDGR GAKVEIAYGP CITIQHVSHV IIHGISIHDC KPGKSGRVRS SPTHVGSRKG SDGDAIAIFD SSHIWIDHCF
201: FSRCQDGLID VLHASTAVTI SNNYFTQHDK VMLLGHNDNN VEDKIMRVTI AFNHFGPGLI ERMPRVRRGY AHVANNRYEK WQMYAIGGSA DPTIFSEGNY
301: FVASDDPSKK QVTKRIDSGY DWKRWKWRTS KDVFKNGAYF VPSGYGTVTP LYGRAERFPV SHGSLVPLLT SSAGPLHCYS GRIC

Arabidopsis Description

Putative pectate lyase 2 [Source:UniProtKB/Swiss-Prot;Acc:O65388]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.