Factsheet for PGSC0003DMT400014086

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 8
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g058890.2.1	Tomato	extracellular	96.2	95.77
PGSC0003DMT400017863	Potato	extracellular	77.18	78.05
PGSC0003DMT400003310	Potato	extracellular	73.6	73.77
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	60.4	60.95
PGSC0003DMT400083135	Potato	extracellular	59.28	60.92
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	59.28	60.64
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	58.84	60.46
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	59.28	60.36
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	59.06	60.27
GSMUA_Achr10P...	Banana	extracellular	51.68	59.23
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	52.13	58.69
TraesCS4A01G385700.1	Wheat	cytosol	28.64	58.45
GSMUA_Achr10P...	Banana	cytosol	45.19	58.38
KRH45851	Soybean	extracellular	58.17	57.65
KRH74782	Soybean	extracellular	57.72	57.59
KRH69345	Soybean	extracellular	57.49	57.49
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	56.15	56.66
PGSC0003DMT400027955	Potato	extracellular	50.56	56.36
HORVU6Hr1G038630.1	Barley	extracellular	50.56	55.8
PGSC0003DMT400002241	Potato	extracellular	54.36	55.35
PGSC0003DMT400032910	Potato	endoplasmic reticulum, extracellular, vacuole	49.89	55.34
Os02t0214400-01	Rice	plasma membrane	55.03	55.16
PGSC0003DMT400039385	Potato	extracellular	49.66	55.09
Zm00001d046389_P007	Maize	endoplasmic reticulum, extracellular	53.24	54.97
Os06t0583900-01	Rice	plasma membrane	54.59	54.46
PGSC0003DMT400014085	Potato	extracellular, golgi	48.32	54.27
CDY04133	Canola	extracellular	55.7	54.25
OQU75805	Sorghum	mitochondrion	53.47	54.07
TraesCS7B01G261700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	53.69	54.05
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	55.26	54.05
AT1G14420.1	Thale cress	endoplasmic reticulum	55.48	54.03
Bra017412.1-P	Field mustard	extracellular	55.48	54.03
Bra026832.1-P	Field mustard	extracellular	54.59	53.98
KRG93502	Soybean	extracellular	53.47	53.95
KRH18498	Soybean	endoplasmic reticulum, extracellular, vacuole	53.47	53.95
CDY68729	Canola	endoplasmic reticulum, extracellular, plasma membrane	55.26	53.93
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	55.26	53.93
CDX96854	Canola	endoplasmic reticulum, extracellular, plasma membrane	55.26	53.93
KRH01130	Soybean	extracellular	53.02	53.86
TraesCS7A01G365700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	53.47	53.83
PGSC0003DMT400069632	Potato	vacuole	48.77	53.83
CDY17432	Canola	extracellular	55.26	53.81
CDY03043	Canola	extracellular	55.26	53.81
EES06507	Sorghum	golgi, vacuole	53.47	53.71
TraesCS7D01G356700.1	Wheat	extracellular	53.24	53.6
CDY45202	Canola	extracellular	55.03	53.59
Bra024811.1-P	Field mustard	extracellular	55.03	53.59
AT2G02720.1	Thale cress	extracellular, vacuole	54.36	53.41
Zm00001d000216_P001	Maize	golgi, vacuole	52.13	53.2
TraesCS7A01G086600.1	Wheat	endoplasmic reticulum, extracellular	53.24	53.12
EER88571	Sorghum	endoplasmic reticulum, plasma membrane	53.91	53.08
Os06t0144200-01	Rice	extracellular, plasma membrane	53.24	52.89
HORVU7Hr1G085860.1	Barley	endoplasmic reticulum, extracellular, vacuole	52.35	52.7
CDY28691	Canola	endoplasmic reticulum, extracellular, vacuole	55.26	52.67
Bra026221.1-P	Field mustard	endoplasmic reticulum	53.91	52.62
CDY39314	Canola	extracellular	53.47	52.07
CDX91953	Canola	endoplasmic reticulum, extracellular	54.59	51.8
CDX74293	Canola	endoplasmic reticulum, extracellular	54.59	51.8
TraesCS6D01G170500.1	Wheat	golgi	49.22	51.76
AT5G15110.1	Thale cress	endoplasmic reticulum, extracellular	54.59	51.69
PGSC0003DMT400045436	Potato	extracellular	52.8	51.42
CDX85564	Canola	extracellular	54.36	51.37
CDX78607	Canola	endoplasmic reticulum, extracellular	54.59	51.37
CDX70590	Canola	endoplasmic reticulum, extracellular	54.59	51.37
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	54.59	51.37
TraesCS6B01G211900.1	Wheat	extracellular, golgi, vacuole	48.77	51.29
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	53.91	51.17
Os06t0144900-01	Rice	mitochondrion	54.14	51.16
Zm00001d036158_P001	Maize	endoplasmic reticulum, extracellular, vacuole	51.68	50.99
CDY66593	Canola	endoplasmic reticulum, extracellular	56.82	50.9
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	56.6	50.7
CDX69550	Canola	endoplasmic reticulum, extracellular	56.6	50.7
PGSC0003DMT400040893	Potato	endoplasmic reticulum, vacuole	49.66	50.57
CDY63769	Canola	extracellular	54.14	50.52
Bra023504.1-P	Field mustard	extracellular	54.36	50.52
AT3G01270.1	Thale cress	endoplasmic reticulum, extracellular	53.47	50.32
EER87830	Sorghum	endoplasmic reticulum, extracellular, vacuole	52.13	50.11
CDX81636	Canola	endoplasmic reticulum	53.91	49.79
PGSC0003DMT400009869	Potato	cytosol	46.53	48.83
CDY53552	Canola	extracellular	53.91	48.69
PGSC0003DMT400076251	Potato	extracellular	48.77	48.66
PGSC0003DMT400051938	Potato	endoplasmic reticulum, extracellular	49.66	48.26
Zm00001d036945_P001	Maize	endoplasmic reticulum	44.97	47.86
TraesCS6A01G184500.2	Wheat	extracellular, golgi, vacuole	49.22	47.52
PGSC0003DMT400042395	Potato	extracellular	40.27	47.24
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	41.39	46.6
PGSC0003DMT400011046	Potato	mitochondrion	30.2	46.39
HORVU7Hr1G019500.1	Barley	mitochondrion	53.47	45.96
PGSC0003DMT400079776	Potato	plasma membrane	46.76	42.65
GSMUA_Achr7P08840_001	Banana	nucleus	59.06	39.4
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	44.97	35.2
CDY04136	Canola	mitochondrion, nucleus	0.45	1.32

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:102602669	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334
UniProt:M1A3Q0	PFAM:PF00544	PFAM:PF04431	EnsemblPlantsGene:PGSC0003DMG400005523	PGSC:PGSC0003DMG400005523	EnsemblPlants:PGSC0003DMT400014086
PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF7	InterPro:Pec_lyase	InterPro:Pec_lyase_N	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000296975B
RefSeq:XP_006361835.1	SEG:seg	:	:	:	:

Description

Pectate lyase P59 [Source:PGSC_GENE;Acc:PGSC0003DMG400005523]

Coordinates

chr3:+:31505869..31507745

Molecular Weight (calculated)

50754.8 Da

IEP (calculated)

8.649

GRAVY (calculated)

-0.432

Length

447 amino acids

Sequence
(BLAST)

001: MGGPKIKYTF LFLCITFATI IPSLMAHIGH YDEVWRRRAE EAKEYARQIY ERHPENVTLA FNQKLRNTMK ELKEVKGTNS TRRGLGTKKY CGPCIVTNPI
101: DRCWRCDPNW ADNRKRLADC AMGFGSKVTG GKNGEFYVVT DNSDDYNDPK PGTLRYAVIQ KEPLWIIFKR GMNIRLHQEM IMQSDKTIDA RGVNVHITKG
201: AGITLQYIKN VIIHGLHIHD IVEGNGGMVR DAVDHIGIRT KSDGDGISIF GASNIWIDHV SMQRCYDGLI DAVEGSTGIT ISNGHFTDHN EVMLFGASDS
301: SSIDQVMQIT LAFNHFGKRL VQRMPRCRWG YIHVVNNDYT HWNMYAIGGS MHPTIITQGN RFIAPPDIFK KQVTKREYNP ESVWMQWTWR SEGNLFMNGA
401: YFTESGDPDW SKKHKDLYDG ISAAPAEDVT WMTRFAGVLA CKPGKPC

Best Arabidopsis Sequence Match ( AT1G14420.1 )
(BLAST)

001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC

Arabidopsis Description

AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.