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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 5
  • golgi 5
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, vacuole
Any Predictor:nucleus, secretory
BaCelLo:secretory
EpiLoc:nucleus
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d036158_P001 Maize endoplasmic reticulum, extracellular, vacuole 83.66 85.87
Os06t0144900-01 Rice mitochondrion 69.68 68.5
OQU75805 Sorghum mitochondrion 64.73 68.1
GSMUA_Achr10P... Banana cytosol 44.09 59.25
GSMUA_Achr6P00830_001 Banana endoplasmic reticulum, extracellular 54.19 57.67
GSMUA_Achr2P16830_001 Banana endoplasmic reticulum, extracellular 53.76 57.08
KRH63402 Soybean extracellular 53.12 56.78
KRH54508 Soybean extracellular 40.43 56.46
GSMUA_Achr10P... Banana extracellular 47.31 56.41
VIT_01s0026g01670.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 53.55 56.21
VIT_14s0108g00030.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 52.9 56.04
VIT_17s0000g05740.t01 Wine grape extracellular 51.18 55.48
VIT_01s0026g01680.t01 Wine grape endoplasmic reticulum, extracellular 52.04 54.63
EER88571 Sorghum endoplasmic reticulum, plasma membrane 53.12 54.41
PGSC0003DMT400003310 Potato extracellular 51.83 54.04
Solyc06g071020.2.1 Tomato extracellular 50.54 54.02
EES06507 Sorghum golgi, vacuole 51.4 53.71
Solyc02g087670.2.1 Tomato extracellular 51.4 53.59
PGSC0003DMT400083135 Potato extracellular 50.11 53.56
PGSC0003DMT400046723 Potato endoplasmic reticulum, golgi, vacuole 49.89 53.33
Solyc03g113150.2.1 Tomato endoplasmic reticulum, golgi, vacuole 49.68 53.1
KRH45851 Soybean extracellular 51.4 52.99
KRH74782 Soybean extracellular 50.97 52.9
KXG22892 Sorghum cytosol 31.4 52.71
KRH01130 Soybean extracellular 49.68 52.5
AT1G14420.1 Thale cress endoplasmic reticulum 51.61 52.29
PGSC0003DMT400002241 Potato extracellular 49.25 52.16
PGSC0003DMT400014086 Potato extracellular 50.11 52.13
PGSC0003DMT400017863 Potato extracellular 49.46 52.04
Bra026832.1-P Field mustard extracellular 50.54 51.99
KRH69345 Soybean extracellular 49.89 51.9
CDY68729 Canola endoplasmic reticulum, extracellular, plasma membrane 50.75 51.53
Solyc01g010740.2.1 Tomato endoplasmic reticulum, extracellular 48.6 51.48
PGSC0003DMT400017862 Potato endoplasmic reticulum, extracellular 43.87 51.39
Solyc03g058890.2.1 Tomato extracellular 49.46 51.22
CDY17432 Canola extracellular 50.54 51.2
CDX96854 Canola endoplasmic reticulum, extracellular, plasma membrane 50.32 51.09
Bra016700.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 50.32 51.09
CDY04133 Canola extracellular 50.32 50.98
Bra017412.1-P Field mustard extracellular 50.32 50.98
AT5G15110.1 Thale cress endoplasmic reticulum, extracellular 51.61 50.85
KRH18498 Soybean endoplasmic reticulum, extracellular, vacuole 48.39 50.79
Bra026221.1-P Field mustard endoplasmic reticulum 49.68 50.44
KRG93502 Soybean extracellular 47.74 50.11
AT2G02720.1 Thale cress extracellular, vacuole 49.03 50.11
Bra026583.1-P Field mustard endoplasmic reticulum, plasma membrane 49.25 50.11
AT3G01270.1 Thale cress endoplasmic reticulum, extracellular 51.18 50.11
CDX70590 Canola endoplasmic reticulum, extracellular 50.97 49.89
CDX91953 Canola endoplasmic reticulum, extracellular 50.54 49.89
CDX74293 Canola endoplasmic reticulum, extracellular 50.54 49.89
CDY03043 Canola extracellular 49.25 49.89
CDY39314 Canola extracellular 49.25 49.89
Solyc03g058910.2.1 Tomato extracellular, golgi 42.58 49.75
CDX78607 Canola endoplasmic reticulum, extracellular 50.75 49.68
Bra006279.1-P Field mustard endoplasmic reticulum, extracellular 50.75 49.68
CDY28691 Canola endoplasmic reticulum, extracellular, vacuole 50.11 49.68
CDY45202 Canola extracellular 49.03 49.67
Bra024811.1-P Field mustard extracellular 49.03 49.67
Bra001011.1-P Field mustard endoplasmic reticulum, extracellular 50.11 49.47
CDX85564 Canola extracellular 50.11 49.26
PGSC0003DMT400014085 Potato extracellular, golgi 42.15 49.25
Solyc05g007080.2.1 Tomato extracellular 48.17 49.12
CDY66593 Canola endoplasmic reticulum, extracellular 52.47 48.9
CDY63769 Canola extracellular 50.32 48.85
PGSC0003DMT400045436 Potato extracellular 48.17 48.8
Bra008721.1-P Field mustard endoplasmic reticulum, extracellular 52.26 48.7
CDX69550 Canola endoplasmic reticulum, extracellular 52.26 48.7
Bra023504.1-P Field mustard extracellular 50.32 48.65
CDX81636 Canola endoplasmic reticulum 49.46 47.52
CDY53552 Canola extracellular 50.32 47.27
KXG25802 Sorghum plastid 48.6 46.69
KXG38421 Sorghum extracellular 44.09 42.53
Solyc02g067450.2.1 Tomato extracellular 46.88 35.39
GSMUA_Achr7P08840_001 Banana nucleus 50.75 35.22
CDY04136 Canola mitochondrion, nucleus 0.43 1.32
Protein Annotations
KEGG:00040+4.2.2.2Gene3D:2.160.20.10MapMan:21.3.5.2EntrezGene:8068765InterPro:AmbAllergenUniProt:C5Z3W2
EnsemblPlants:EER87830ProteinID:EER87830ProteinID:EER87830.1GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016829
GO:GO:0030570GO:GO:0045490GO:GO:0046872InterPro:IPR012334PFAM:PF00544PFAM:PF04431
PRINTS:PR00807PANTHER:PTHR31683PANTHER:PTHR31683:SF60InterPro:Pec_lyaseInterPro:Pec_lyase_NInterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulenceSMART:SM00656EnsemblPlantsGene:SORBI_3010G034200SUPFAM:SSF51126unigene:Sbi.388SignalP:SignalP-noTM
TMHMM:TMhelixUniParc:UPI0001A88F87RefSeq:XP_002436463.1SEG:seg::
Description
hypothetical protein
Coordinates
chr10:+:2784319..2785924
Molecular Weight (calculated)
51527.1 Da
IEP (calculated)
9.170
GRAVY (calculated)
-0.329
Length
465 amino acids
Sequence
(BLAST)
001: MAVTAVVTRR PLSILFYIIL AAVAATTAAA AETPTDAAID AAYAQLVNVT ANQEYWAERA EVAHAYNRAA YESDPVGVMD RFNDGVRRAM ETSTPTRSRS
101: RSLAHKARGG PCTATNPIDQ CWRCRGDWAR NRKRLARCGM GFGHRTTGGL AGRIYVVTDP SDEPANLVVP RKGTLRYAVI QDRPLWITFA RDMVINLCRE
201: LLVTSDKTID GRGAQVHVVG AQITLQNVRN VILHNLHIHD AAPRGGGVIR DSKHHWGLRG ESDGDGVSVM GSSDIWIDHV SMRSCADGLV DVVDGSTAVT
301: ISNGHFTRHD HVMLFGASDA AVKDKAMQVT VAFNHFGKGL VQRMPRCRHG FFHVVNNDYT HWLMYAIGGS QNPTIISQGN RFRAVDDGRF KEVTKREYTP
401: YSEYKDWVWK SQDDLFLNGA FFNQSGGENE RRFDRLDLIQ AKGGQYAELL TRYAGALNCR VGKKC
Best Arabidopsis Sequence Match ( AT3G01270.1 )
(BLAST)
001: METARLFKLV CVICIASLIP TIRANVADET DEYWVNKANE ARKHTLMAYH PDPYEIVDHF HERHYDNSTD VEGTEEEKAV ASEEEDVIEM ISSPTNSTRR
101: SLTGRGKGKG KGKWSKLTGP CTASNPIDKC WRCQPDWARR RKKLVHCVRG FGYRTTGGKR GRIYVVTSPR DDDMVNPRPG TLRHAVIQKE PLWIVFKHDM
201: SIRLSQELMI TSDKTIDARG ANVHIAYGAG ITMQYVHNII IHGLHVHHIV KSSGGLIRDS INHFGHRGEA DGDGISIFGA TNIWLDHISM SKCQDGLIDA
301: IMGSTAITIS NSHFTHHNDV MLLGAQNNNM DDKKMQVTVA YNHFGKGLVQ RMPRVRWGFV HVVNNDYTHW ELYAIGGSQG PTILSHGNRF IAPPHKQHYR
401: EVTKRDYASE SEWKNWNWRS EKDVFMNNAY FRQSGNPHFK CSHSRQQMIK PKNGMAVSKL TKYAGALDCR VGKAC
Arabidopsis Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q08A70]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.