CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032806_P001	Maize	cytosol, plastid	77.8	86.81
TraesCS1B01G161000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	81.33	82.35
TraesCS1D01G142400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	81.54	82.22
TraesCS1A01G143600.1	Wheat	extracellular	81.74	82.08
Os10t0457200-01	Rice	plasma membrane	81.33	79.84
HORVU1Hr1G038220.7	Barley	endoplasmic reticulum, extracellular	73.03	72.28
GSMUA_Achr4P25120_001	Banana	extracellular	60.37	65.1
PGSC0003DMT400009869	Potato	cytosol	53.94	61.03
GSMUA_Achr1P03320_001	Banana	plasma membrane	63.28	59.69
Bra006976.1-P	Field mustard	cytosol	56.02	59.08
KRH67761	Soybean	endoplasmic reticulum, extracellular, vacuole	57.47	58.94
VIT_08s0007g04820.t01	Wine grape	plastid	59.13	58.28
KRH19954	Soybean	endoplasmic reticulum, extracellular, plasma membrane	57.47	58.07
CDX73573	Canola	extracellular	57.05	57.77
CDX78152	Canola	extracellular	56.43	57.14
Solyc09g008380.2.1	Tomato	nucleus	56.85	56.73
CDX67560	Canola	plasma membrane	56.64	55.71
Bra028549.1-P	Field mustard	plasma membrane	56.64	55.71
AT3G53190.1	Thale cress	extracellular	55.81	55.69
KXG22892	Sorghum	cytosol	31.95	55.6
KXG25802	Sorghum	plastid	52.49	52.27
CDY13312	Canola	plasma membrane	55.19	49.63
OQU75805	Sorghum	mitochondrion	44.81	48.87
EES06507	Sorghum	golgi, vacuole	43.57	47.19
EER88571	Sorghum	endoplasmic reticulum, plasma membrane	42.74	45.37
EER87830	Sorghum	endoplasmic reticulum, extracellular, vacuole	42.53	44.09

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	UniProt:A0A1B6QKH6	InterPro:AmbAllergen	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334
EnsemblPlants:KXG38421	ProteinID:KXG38421	ProteinID:KXG38421.1	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF11	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	EnsemblPlantsGene:SORBI_3001G230400
SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00081AC9D6	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:22258421..22262315

Molecular Weight (calculated)

51093.2 Da

IEP (calculated)

6.284

GRAVY (calculated)

-0.175

Length

482 amino acids

Sequence
(BLAST)

001: MARPPKSTGI AFSLLLLAAA AAASDLLLLN STLPDPAAVV ADLHSKVAMS RRRMQEAGGA SGGGGCLTGN PIDDCWRCSG TDWRQDRQRL ADCGIGFGRN
101: ALGGKGGPVY VVTDSSDGDP VNPVPGTLRH AAIQEGPLWI VFASDMAIRL NEELLVNSYK TIDGRGARVH IGGGGACITL QYVSNVIIHN VHVHDCVPAG
201: NANVRSSPTH YGWRTRSDGD GISLFGARDV WVDHCALWRC ADGLVDAIMG STAITVSNSY FAHHDEVMLL GASDAYLPDS GMQVTIAFNR FGPGLVQRMP
301: RCRRGYFHIV NNDYTSWEMY AIGGSANPTI NSQGNRYIAP GDPNAKEVTK RVDTAEGQWN GWNWRTEGDM MVNGAFFVPS GEGLEEIYDK ASSTDPKSSA
401: LVDVLTQNAG VLGDPRNDAE ETGYRGVNYA GVGTGGGGGN GYGYLGMVYA NGGGDRRSRS QSALSLISSV TTLIALGCLR LL

Best Arabidopsis Sequence Match ( AT3G53190.1 )
(BLAST)

001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.