Factsheet for TraesCS1D01G142400.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G143600.1	Wheat	extracellular	97.49	97.08
TraesCS1B01G161000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	95.82	96.22
HORVU1Hr1G038220.7	Barley	endoplasmic reticulum, extracellular	84.1	82.55
Os10t0457200-01	Rice	plasma membrane	84.52	82.28
KXG38421	Sorghum	extracellular	82.22	81.54
Zm00001d032806_P001	Maize	cytosol, plastid	69.67	77.08
GSMUA_Achr4P25120_001	Banana	extracellular	60.88	65.1
PGSC0003DMT400009869	Potato	cytosol	54.39	61.03
GSMUA_Achr1P03320_001	Banana	plasma membrane	64.64	60.47
Bra006976.1-P	Field mustard	cytosol	56.9	59.52
KRH67761	Soybean	endoplasmic reticulum, extracellular, vacuole	57.95	58.94
CDX73573	Canola	extracellular	58.37	58.61
CDX78152	Canola	extracellular	57.74	57.98
VIT_08s0007g04820.t01	Wine grape	plastid	59.2	57.87
KRH19954	Soybean	endoplasmic reticulum, extracellular, plasma membrane	57.32	57.44
AT3G53190.1	Thale cress	extracellular	57.32	56.73
Solyc09g008380.2.1	Tomato	nucleus	57.32	56.73
Bra028549.1-P	Field mustard	plasma membrane	57.53	56.12
CDX67560	Canola	plasma membrane	57.53	56.12
TraesCS2D01G018000.1	Wheat	golgi	54.81	55.39
TraesCS6D01G129200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	43.51	55.03
CDY13312	Canola	plasma membrane	56.28	50.19
TraesCS6D01G170500.1	Wheat	golgi	42.89	48.24
TraesCS7D01G356700.1	Wheat	extracellular	43.31	46.62

Protein Annotations

EnsemblPlants:TraesCS1D01G142400.1	EnsemblPlantsGene:TraesCS1D01G142400	Gene3D:2.160.20.10	InterPro:AmbAllergen	InterPro:IPR012334	InterPro:Pec_lyase
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	KEGG:00040+4.2.2.2	PANTHER:PTHR31683	PANTHER:PTHR31683:SF11	PFAM:PF00544
PRINTS:PR00807	SEG:seg	SignalP:SignalP-noTM	SMART:SM00656	SUPFAM:SSF51126	TMHMM:TMhelix
MapMan:21.3.5.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:197736748..197741334

Molecular Weight (calculated)

50882.2 Da

IEP (calculated)

6.312

GRAVY (calculated)

-0.128

Length

478 amino acids

Sequence
(BLAST)

001: MAGAPKSTLI ILLLSLMLLG AAASPLPLLN SSLPDPAAVV ADFHSKVTTS RRRMQETGGG GGCMTGNPID DCWRCAGTDW WKDRQRLADC GIGFGRNALG
101: GKGGPFYVVT DSSDRDPVNP APGTLRHAAI QEGPLWIVFA ADMTIRLNEE LLVNSYKTID GRGANVHVAG GACITLQYVA NVIIHNLHVH DCVPAGNANV
201: RSSPTHYGWR TRSDGDGISL FSARDVWVDH CALSRCADGL VDAIMGSTGI TVSNSYFSHH DEVMLLGHSD GYLPDSGMQV TIAFNHFGVQ LVQRMPRCRR
301: GYFHIVNNDY TAWEMYAIGG SASPTINSQG NRYIAPANPN AKEVTKRVDT EEGQWNGWNW RTEGDMMVNG AFFVPSGEGM ENIYDKASSG VDPKSSALVD
401: QLTMGAGVLG GPRDNGEASS YVGFNYAGSA TGGGGGGGNG YGSLGMVYAN SGDRGCRTQL ILSFTTLIIA LICCVRLD

Best Arabidopsis Sequence Match ( AT3G53190.1 )
(BLAST)

001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.