Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 6
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6B01G211900.1 | Wheat | extracellular, golgi, vacuole | 96.0 | 96.0 |
TraesCS6A01G184500.2 | Wheat | extracellular, golgi, vacuole | 94.59 | 86.83 |
HORVU6Hr1G038630.1 | Barley | extracellular | 80.71 | 84.69 |
Os02t0214400-01 | Rice | plasma membrane | 66.12 | 63.0 |
EES06507 | Sorghum | golgi, vacuole | 64.24 | 61.35 |
TraesCS7D01G356700.1 | Wheat | extracellular | 62.82 | 60.14 |
GSMUA_Achr10P... | Banana | cytosol | 48.94 | 60.12 |
GSMUA_Achr10P... | Banana | extracellular | 51.53 | 56.15 |
VIT_14s0108g00030.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 57.18 | 55.35 |
VIT_17s0000g05740.t01 | Wine grape | extracellular | 55.29 | 54.78 |
VIT_01s0026g01670.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 55.76 | 53.5 |
KRH01130 | Soybean | extracellular | 55.29 | 53.41 |
GSMUA_Achr6P00830_001 | Banana | endoplasmic reticulum, extracellular | 54.82 | 53.32 |
GSMUA_Achr2P16830_001 | Banana | endoplasmic reticulum, extracellular | 54.82 | 53.2 |
PGSC0003DMT400083135 | Potato | extracellular | 54.35 | 53.1 |
Solyc03g113150.2.1 | Tomato | endoplasmic reticulum, golgi, vacuole | 54.35 | 53.1 |
PGSC0003DMT400046723 | Potato | endoplasmic reticulum, golgi, vacuole | 54.12 | 52.87 |
Solyc06g071020.2.1 | Tomato | extracellular | 53.65 | 52.41 |
KRH18498 | Soybean | endoplasmic reticulum, extracellular, vacuole | 53.88 | 51.69 |
VIT_01s0026g01680.t01 | Wine grape | endoplasmic reticulum, extracellular | 53.88 | 51.69 |
KRH63402 | Soybean | extracellular | 52.71 | 51.49 |
KRG93502 | Soybean | extracellular | 53.41 | 51.24 |
PGSC0003DMT400002241 | Potato | extracellular | 52.71 | 51.03 |
KRH54508 | Soybean | extracellular | 39.53 | 50.45 |
PGSC0003DMT400017862 | Potato | endoplasmic reticulum, extracellular | 47.06 | 50.38 |
Solyc01g010740.2.1 | Tomato | endoplasmic reticulum, extracellular | 52.0 | 50.34 |
PGSC0003DMT400003310 | Potato | extracellular | 52.0 | 49.55 |
Solyc02g087670.2.1 | Tomato | extracellular | 52.0 | 49.55 |
TraesCS6D01G129200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 44.0 | 49.47 |
PGSC0003DMT400014085 | Potato | extracellular, golgi | 46.12 | 49.25 |
PGSC0003DMT400014086 | Potato | extracellular | 51.76 | 49.22 |
Solyc03g058890.2.1 | Tomato | extracellular | 51.76 | 49.0 |
Solyc03g058910.2.1 | Tomato | extracellular, golgi | 45.88 | 48.99 |
AT3G01270.1 | Thale cress | endoplasmic reticulum, extracellular | 54.12 | 48.42 |
KRH74782 | Soybean | extracellular | 50.82 | 48.21 |
CDX91953 | Canola | endoplasmic reticulum, extracellular | 53.41 | 48.2 |
CDX74293 | Canola | endoplasmic reticulum, extracellular | 53.41 | 48.2 |
PGSC0003DMT400017863 | Potato | extracellular | 50.12 | 48.19 |
CDY28691 | Canola | endoplasmic reticulum, extracellular, vacuole | 52.94 | 47.97 |
KRH45851 | Soybean | extracellular | 50.82 | 47.89 |
Bra026832.1-P | Field mustard | extracellular | 50.82 | 47.79 |
Bra001011.1-P | Field mustard | endoplasmic reticulum, extracellular | 52.94 | 47.77 |
Bra016700.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 51.29 | 47.6 |
CDX96854 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 51.29 | 47.6 |
AT1G14420.1 | Thale cress | endoplasmic reticulum | 51.29 | 47.49 |
CDY68729 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 51.06 | 47.38 |
Bra026221.1-P | Field mustard | endoplasmic reticulum | 51.06 | 47.38 |
TraesCS2D01G018000.1 | Wheat | golgi | 52.24 | 46.93 |
CDY39314 | Canola | extracellular | 50.59 | 46.84 |
AT5G15110.1 | Thale cress | endoplasmic reticulum, extracellular | 52.0 | 46.82 |
CDY17432 | Canola | extracellular | 50.35 | 46.62 |
CDY63769 | Canola | extracellular | 52.47 | 46.56 |
Bra017412.1-P | Field mustard | extracellular | 50.12 | 46.41 |
CDY04133 | Canola | extracellular | 50.12 | 46.41 |
Bra006279.1-P | Field mustard | endoplasmic reticulum, extracellular | 51.76 | 46.32 |
CDX78607 | Canola | endoplasmic reticulum, extracellular | 51.76 | 46.32 |
CDX70590 | Canola | endoplasmic reticulum, extracellular | 51.76 | 46.32 |
KRH69345 | Soybean | extracellular | 48.71 | 46.31 |
CDX85564 | Canola | extracellular | 51.53 | 46.3 |
Bra023504.1-P | Field mustard | extracellular | 51.76 | 45.74 |
Bra026583.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 48.47 | 45.08 |
Solyc05g007080.2.1 | Tomato | extracellular | 48.24 | 44.96 |
Bra008721.1-P | Field mustard | endoplasmic reticulum, extracellular | 52.47 | 44.69 |
CDY66593 | Canola | endoplasmic reticulum, extracellular | 52.47 | 44.69 |
CDX69550 | Canola | endoplasmic reticulum, extracellular | 52.47 | 44.69 |
PGSC0003DMT400045436 | Potato | extracellular | 48.24 | 44.66 |
CDY45202 | Canola | extracellular | 48.24 | 44.66 |
Bra024811.1-P | Field mustard | extracellular | 48.24 | 44.66 |
CDY03043 | Canola | extracellular | 48.0 | 44.44 |
AT2G02720.1 | Thale cress | extracellular, vacuole | 47.29 | 44.18 |
CDX81636 | Canola | endoplasmic reticulum | 49.65 | 43.59 |
CDY53552 | Canola | extracellular | 50.59 | 43.43 |
TraesCS1D01G142400.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 48.24 | 42.89 |
GSMUA_Achr7P08840_001 | Banana | nucleus | 54.82 | 34.78 |
Solyc02g067450.2.1 | Tomato | extracellular | 48.24 | 33.28 |
CDY04136 | Canola | mitochondrion, nucleus | 0.71 | 1.97 |
Protein Annotations
KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | InterPro:AmbAllergen | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0030570 | InterPro:IPR012334 | PFAM:PF00544 | PFAM:PF04431 | PRINTS:PR00807 | PANTHER:PTHR31683 |
PANTHER:PTHR31683:SF32 | InterPro:Pec_lyase | InterPro:Pec_lyase_N | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00656 |
SUPFAM:SSF51126 | SignalP:SignalP-noTM | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6D01G170500 | EnsemblPlants:TraesCS6D01G170500.1 | SEG:seg |
Description
No Description!
Coordinates
chr6D:-:157166704..157168206
Molecular Weight (calculated)
46983.7 Da
IEP (calculated)
9.174
GRAVY (calculated)
-0.426
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRSLQWSRP ASLLLLGAAF LAAAAVASAN PAYNPDPYSV VDHFNRAVHR STSPRRALSS EKKSKKAKYT GPCMATNPID RCWRCRQDWA TDRQRMARCA
101: KGFGRETTGG LKGKIYIVTD ANDDDFTNPR PGTLRWGAVQ TEPLWIIFAR DMVINASQEI IIQSDKTIDG RGAQVHVANG GGLTIQHQNN VIINNLHVHG
201: IVHTDGGNVS MTATHSTIRT RADGDGVSIF NATKVWVDHL SMDNCEDGMI DVVAMSTAVT VSNTHLAHHN DVMLFGASDH KPEDKVMQVT VAFNHFGRGL
301: VQRMPRCRYG FFHVVNNDYT NWLMYAIGGS SAPTILSQGN RYRAPPNMAA KEATKREYAA ESEWKNWVWV SEGDLMVNDA YFTTSGGKIG QKLNGKDLIK
401: PKQGEYVRRL TRFAGPLDCN QGSPC
101: KGFGRETTGG LKGKIYIVTD ANDDDFTNPR PGTLRWGAVQ TEPLWIIFAR DMVINASQEI IIQSDKTIDG RGAQVHVANG GGLTIQHQNN VIINNLHVHG
201: IVHTDGGNVS MTATHSTIRT RADGDGVSIF NATKVWVDHL SMDNCEDGMI DVVAMSTAVT VSNTHLAHHN DVMLFGASDH KPEDKVMQVT VAFNHFGRGL
301: VQRMPRCRYG FFHVVNNDYT NWLMYAIGGS SAPTILSQGN RYRAPPNMAA KEATKREYAA ESEWKNWVWV SEGDLMVNDA YFTTSGGKIG QKLNGKDLIK
401: PKQGEYVRRL TRFAGPLDCN QGSPC
001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
Arabidopsis Description
AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.