Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- vacuole 4
- plasma membrane 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91953 | Canola | endoplasmic reticulum, extracellular | 89.47 | 90.23 |
| CDX74293 | Canola | endoplasmic reticulum, extracellular | 89.26 | 90.02 |
| CDY28691 | Canola | endoplasmic reticulum, extracellular, vacuole | 88.42 | 89.55 |
| Bra001011.1-P | Field mustard | endoplasmic reticulum, extracellular | 88.42 | 89.17 |
| AT5G15110.1 | Thale cress | endoplasmic reticulum, extracellular | 79.79 | 80.3 |
| VIT_01s0026g01670.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 56.63 | 60.72 |
| VIT_14s0108g00030.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 55.37 | 59.91 |
| GSMUA_Achr10P... | Banana | cytosol | 42.95 | 58.96 |
| VIT_01s0026g01680.t01 | Wine grape | endoplasmic reticulum, extracellular | 53.68 | 57.56 |
| TraesCS4A01G385700.1 | Wheat | cytosol | 26.53 | 57.53 |
| KRH18498 | Soybean | endoplasmic reticulum, extracellular, vacuole | 52.63 | 56.43 |
| GSMUA_Achr6P00830_001 | Banana | endoplasmic reticulum, extracellular | 51.79 | 56.29 |
| GSMUA_Achr2P16830_001 | Banana | endoplasmic reticulum, extracellular | 51.58 | 55.94 |
| GSMUA_Achr10P... | Banana | extracellular | 45.89 | 55.9 |
| Solyc02g087670.2.1 | Tomato | extracellular | 52.21 | 55.61 |
| HORVU6Hr1G038630.1 | Barley | extracellular | 47.37 | 55.56 |
| KRG93502 | Soybean | extracellular | 51.79 | 55.53 |
| PGSC0003DMT400003310 | Potato | extracellular | 51.79 | 55.16 |
| PGSC0003DMT400017863 | Potato | extracellular | 50.74 | 54.52 |
| EES06507 | Sorghum | golgi, vacuole | 50.95 | 54.38 |
| AT1G14420.1 | Thale cress | endoplasmic reticulum | 52.42 | 54.25 |
| TraesCS6D01G170500.1 | Wheat | golgi | 48.42 | 54.12 |
| KRH01130 | Soybean | extracellular | 50.11 | 54.09 |
| PGSC0003DMT400017862 | Potato | endoplasmic reticulum, extracellular | 45.05 | 53.9 |
| Solyc03g058890.2.1 | Tomato | extracellular | 50.95 | 53.9 |
| AT2G02720.1 | Thale cress | extracellular, vacuole | 51.58 | 53.85 |
| TraesCS6B01G211900.1 | Wheat | extracellular, golgi, vacuole | 48.0 | 53.65 |
| AT3G07010.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 46.95 | 53.61 |
| PGSC0003DMT400014086 | Potato | extracellular | 50.32 | 53.47 |
| Os02t0214400-01 | Rice | plasma membrane | 50.11 | 53.36 |
| AT5G48900.1 | Thale cress | extracellular | 46.74 | 53.24 |
| OQU75805 | Sorghum | mitochondrion | 49.47 | 53.17 |
| Os06t0583900-01 | Rice | plasma membrane | 49.89 | 52.9 |
| EER88571 | Sorghum | endoplasmic reticulum, plasma membrane | 50.53 | 52.86 |
| AT4G24780.1 | Thale cress | endoplasmic reticulum, extracellular | 45.26 | 52.7 |
| AT1G67750.1 | Thale cress | endoplasmic reticulum, vacuole | 45.26 | 52.7 |
| TraesCS7A01G365700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 48.84 | 52.25 |
| HORVU7Hr1G085860.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 48.84 | 52.25 |
| Os06t0144200-01 | Rice | extracellular, plasma membrane | 49.47 | 52.22 |
| Zm00001d000216_P001 | Maize | golgi, vacuole | 48.0 | 52.05 |
| TraesCS7D01G356700.1 | Wheat | extracellular | 48.63 | 52.03 |
| Zm00001d046389_P007 | Maize | endoplasmic reticulum, extracellular | 47.37 | 51.96 |
| TraesCS7B01G261700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 48.42 | 51.8 |
| TraesCS7A01G086600.1 | Wheat | endoplasmic reticulum, extracellular | 48.84 | 51.79 |
| AT1G04680.1 | Thale cress | extracellular | 46.74 | 51.51 |
| Zm00001d036158_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 49.05 | 51.43 |
| EER87830 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 50.11 | 51.18 |
| AT4G13210.2 | Thale cress | endoplasmic reticulum, extracellular | 47.16 | 51.14 |
| AT5G63180.1 | Thale cress | plastid | 46.32 | 50.93 |
| AT3G24670.1 | Thale cress | endoplasmic reticulum, extracellular | 46.95 | 50.68 |
| AT3G27400.2 | Thale cress | endoplasmic reticulum, vacuole | 44.21 | 50.48 |
| Os06t0144900-01 | Rice | mitochondrion | 49.89 | 50.11 |
| Solyc03g058910.2.1 | Tomato | extracellular, golgi | 41.89 | 50.0 |
| PGSC0003DMT400014085 | Potato | extracellular, golgi | 41.89 | 50.0 |
| TraesCS6A01G184500.2 | Wheat | extracellular, golgi, vacuole | 48.63 | 49.89 |
| Zm00001d036945_P001 | Maize | endoplasmic reticulum | 43.79 | 49.52 |
| AT1G11920.1 | Thale cress | endoplasmic reticulum, extracellular | 39.16 | 48.44 |
| AT3G24230.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 45.47 | 47.79 |
| AT4G13710.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 47.16 | 47.66 |
| AT4G22080.1 | Thale cress | extracellular | 39.16 | 47.21 |
| AT4G22090.1 | Thale cress | extracellular | 38.53 | 46.45 |
| HORVU7Hr1G019500.1 | Barley | mitochondrion | 49.68 | 45.38 |
| AT1G30350.1 | Thale cress | extracellular | 35.16 | 45.38 |
| AT5G55720.1 | Thale cress | endoplasmic reticulum, extracellular | 36.84 | 44.64 |
| AT3G53190.1 | Thale cress | extracellular | 41.68 | 40.99 |
| AT3G54920.1 | Thale cress | extracellular | 42.53 | 40.32 |
| GSMUA_Achr7P08840_001 | Banana | nucleus | 53.05 | 37.61 |
| Solyc02g067450.2.1 | Tomato | extracellular | 47.79 | 36.85 |
| AT5G04310.1 | Thale cress | plasma membrane | 40.0 | 36.68 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | EntrezGene:821142 | ProteinID:AAF03499.1 | ProteinID:AAF26147.1 |
| ProteinID:AEE73631.1 | ArrayExpress:AT3G01270 | EnsemblPlantsGene:AT3G01270 | RefSeq:AT3G01270 | TAIR:AT3G01270 | RefSeq:AT3G01270-TAIR-G |
| EnsemblPlants:AT3G01270.1 | TAIR:AT3G01270.1 | EMBL:AY084341 | InterPro:AmbAllergen | Unigene:At.18310 | EMBL:BT029009 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 |
| InterPro:IPR012334 | RefSeq:NP_186776.1 | PFAM:PF00544 | PFAM:PF04431 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00807 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF7 | InterPro:Pec_lyase |
| InterPro:Pec_lyase_N | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q08A70 | UniProt:Q9SRH4 | SMART:SM00656 |
| SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniParc:UPI000004868A | SEG:seg | : | : |
Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q08A70]
Coordinates
chr3:-:82581..84901
Molecular Weight (calculated)
53858.2 Da
IEP (calculated)
9.358
GRAVY (calculated)
-0.566
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: METARLFKLV CVICIASLIP TIRANVADET DEYWVNKANE ARKHTLMAYH PDPYEIVDHF HERHYDNSTD VEGTEEEKAV ASEEEDVIEM ISSPTNSTRR
101: SLTGRGKGKG KGKWSKLTGP CTASNPIDKC WRCQPDWARR RKKLVHCVRG FGYRTTGGKR GRIYVVTSPR DDDMVNPRPG TLRHAVIQKE PLWIVFKHDM
201: SIRLSQELMI TSDKTIDARG ANVHIAYGAG ITMQYVHNII IHGLHVHHIV KSSGGLIRDS INHFGHRGEA DGDGISIFGA TNIWLDHISM SKCQDGLIDA
301: IMGSTAITIS NSHFTHHNDV MLLGAQNNNM DDKKMQVTVA YNHFGKGLVQ RMPRVRWGFV HVVNNDYTHW ELYAIGGSQG PTILSHGNRF IAPPHKQHYR
401: EVTKRDYASE SEWKNWNWRS EKDVFMNNAY FRQSGNPHFK CSHSRQQMIK PKNGMAVSKL TKYAGALDCR VGKAC
101: SLTGRGKGKG KGKWSKLTGP CTASNPIDKC WRCQPDWARR RKKLVHCVRG FGYRTTGGKR GRIYVVTSPR DDDMVNPRPG TLRHAVIQKE PLWIVFKHDM
201: SIRLSQELMI TSDKTIDARG ANVHIAYGAG ITMQYVHNII IHGLHVHHIV KSSGGLIRDS INHFGHRGEA DGDGISIFGA TNIWLDHISM SKCQDGLIDA
301: IMGSTAITIS NSHFTHHNDV MLLGAQNNNM DDKKMQVTVA YNHFGKGLVQ RMPRVRWGFV HVVNNDYTHW ELYAIGGSQG PTILSHGNRF IAPPHKQHYR
401: EVTKRDYASE SEWKNWNWRS EKDVFMNNAY FRQSGNPHFK CSHSRQQMIK PKNGMAVSKL TKYAGALDCR VGKAC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.