Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020672.1-P | Field mustard | extracellular | 94.96 | 94.96 |
| CDY33938 | Canola | extracellular | 94.72 | 94.72 |
| CDY05655 | Canola | extracellular | 94.48 | 94.48 |
| CDY19932 | Canola | extracellular | 93.77 | 93.54 |
| Bra036155.1-P | Field mustard | extracellular | 93.77 | 93.54 |
| CDY56668 | Canola | extracellular | 92.81 | 92.58 |
| AT3G07010.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 85.61 | 85.82 |
| AT4G13210.2 | Thale cress | endoplasmic reticulum, extracellular | 78.18 | 74.43 |
| AT3G24670.1 | Thale cress | endoplasmic reticulum, extracellular | 77.94 | 73.86 |
| AT1G04680.1 | Thale cress | extracellular | 76.26 | 73.78 |
| AT4G24780.1 | Thale cress | endoplasmic reticulum, extracellular | 69.06 | 70.59 |
| AT1G67750.1 | Thale cress | endoplasmic reticulum, vacuole | 67.63 | 69.12 |
| AT4G13710.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 75.54 | 67.02 |
| AT5G63180.1 | Thale cress | plastid | 65.95 | 63.66 |
| AT3G27400.2 | Thale cress | endoplasmic reticulum, vacuole | 62.83 | 62.98 |
| AT3G24230.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 68.11 | 62.83 |
| AT5G55720.1 | Thale cress | endoplasmic reticulum, extracellular | 51.8 | 55.1 |
| AT1G11920.1 | Thale cress | endoplasmic reticulum, extracellular | 50.6 | 54.95 |
| AT1G30350.1 | Thale cress | extracellular | 45.8 | 51.9 |
| AT4G22080.1 | Thale cress | extracellular | 47.96 | 50.76 |
| AT4G22090.1 | Thale cress | extracellular | 47.96 | 50.76 |
| AT3G53190.1 | Thale cress | extracellular | 58.51 | 50.52 |
| AT5G15110.1 | Thale cress | endoplasmic reticulum, extracellular | 53.72 | 47.46 |
| AT3G01270.1 | Thale cress | endoplasmic reticulum, extracellular | 53.24 | 46.74 |
| AT3G54920.1 | Thale cress | extracellular | 55.16 | 45.91 |
| AT1G14420.1 | Thale cress | endoplasmic reticulum | 49.64 | 45.1 |
| AT5G04310.1 | Thale cress | plasma membrane | 55.64 | 44.79 |
| AT2G02720.1 | Thale cress | extracellular, vacuole | 46.52 | 42.64 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | EntrezGene:834948 | ProteinID:AED95740.1 | ArrayExpress:AT5G48900 |
| EnsemblPlantsGene:AT5G48900 | RefSeq:AT5G48900 | TAIR:AT5G48900 | RefSeq:AT5G48900-TAIR-G | EnsemblPlants:AT5G48900.1 | TAIR:AT5G48900.1 |
| EMBL:AY050404 | EMBL:AY050795 | EMBL:AY086099 | InterPro:AmbAllergen | Unigene:At.26564 | ProteinID:BAB10313.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 |
| InterPro:IPR012334 | RefSeq:NP_568705.1 | PFAM:PF00544 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00807 | PANTHER:PTHR31683 |
| PANTHER:PTHR31683:SF34 | InterPro:Pec_lyase | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q93WF1 | SMART:SM00656 |
| SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniParc:UPI000009CE5F | SEG:seg | : | : |
Description
Probable pectate lyase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WF1]
Coordinates
chr5:+:19825078..19829140
Molecular Weight (calculated)
46730.3 Da
IEP (calculated)
8.676
GRAVY (calculated)
-0.316
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVTQILVVF ASALLLSMFF TGVDSTRSNE TWHEHAVENP EEVAAMVDMS IRNSTARRRL GYFSCSTGNP IDDCWRCDRR WQSRRKHLAN CAIGFGRNAI
101: GGRDGRYYVV SDPNDDNPVN PKPGTLRHAV IQEEPLWIVF KRDMVITLKE ELIMNSFKTI DGRGVNVHIA NGACITIQFV TNIIIHGIHI HDCRPTGNAM
201: VRSSPSHYGW RTMADGDGIS IFGSSHIWID HNSLSNCADG LIDAVMASTA ITISNNYFTH HNEVMLLGHS DTYTRDKVMQ VTIAYNHFGE GLIQRMPRCR
301: HGYFHVVNND YTHWEMYAIG GSASPTINSQ GNRYLAPRNR FAKEVTKRDY AGQWQWRHWN WRSEGDLFLN GAFFTRSGSG LGASYARASS LAAKSSSLVG
401: VITYNAGALN CRGGRRC
101: GGRDGRYYVV SDPNDDNPVN PKPGTLRHAV IQEEPLWIVF KRDMVITLKE ELIMNSFKTI DGRGVNVHIA NGACITIQFV TNIIIHGIHI HDCRPTGNAM
201: VRSSPSHYGW RTMADGDGIS IFGSSHIWID HNSLSNCADG LIDAVMASTA ITISNNYFTH HNEVMLLGHS DTYTRDKVMQ VTIAYNHFGE GLIQRMPRCR
301: HGYFHVVNND YTHWEMYAIG GSASPTINSQ GNRYLAPRNR FAKEVTKRDY AGQWQWRHWN WRSEGDLFLN GAFFTRSGSG LGASYARASS LAAKSSSLVG
401: VITYNAGALN CRGGRRC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.