Factsheet for AT1G30350.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

endoplasmic reticulum 5
golgi 5
extracellular 7
vacuole 5
plasma membrane 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G11920.1	Thale cress	endoplasmic reticulum, extracellular	73.1	70.05
Bra012756.1-P	Field mustard	extracellular	64.13	60.67
AT4G22090.1	Thale cress	extracellular	61.14	57.11
AT4G22080.1	Thale cress	extracellular	60.05	56.09
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	57.88	53.65
AT1G67750.1	Thale cress	endoplasmic reticulum, vacuole	52.99	47.79
AT4G24780.1	Thale cress	endoplasmic reticulum, extracellular	52.45	47.3
AT3G27400.2	Thale cress	endoplasmic reticulum, vacuole	52.45	46.39
AT5G48900.1	Thale cress	extracellular	51.9	45.8
AT3G07010.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	51.63	45.67
AT5G55720.1	Thale cress	endoplasmic reticulum, extracellular	48.64	45.66
AT1G04680.1	Thale cress	extracellular	51.9	44.32
AT4G13210.2	Thale cress	endoplasmic reticulum, extracellular	51.9	43.61
AT5G63180.1	Thale cress	plastid	50.54	43.06
AT3G24670.1	Thale cress	endoplasmic reticulum, extracellular	49.46	41.36
AT3G24230.1	Thale cress	endoplasmic reticulum, golgi, vacuole	49.73	40.49
AT4G13710.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	50.0	39.15
AT2G02720.1	Thale cress	extracellular, vacuole	46.2	37.36
AT3G54920.1	Thale cress	extracellular	50.0	36.73
AT1G14420.1	Thale cress	endoplasmic reticulum	45.65	36.6
AT3G53190.1	Thale cress	extracellular	46.2	35.2
AT3G01270.1	Thale cress	endoplasmic reticulum, extracellular	45.38	35.16
AT5G04310.1	Thale cress	plasma membrane	49.18	34.94
AT5G15110.1	Thale cress	endoplasmic reticulum, extracellular	44.29	34.53

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	EntrezGene:839915	ProteinID:AAG51103.1	ProteinID:AEE31208.1
ArrayExpress:AT1G30350	EnsemblPlantsGene:AT1G30350	RefSeq:AT1G30350	TAIR:AT1G30350	RefSeq:AT1G30350-TAIR-G	EnsemblPlants:AT1G30350.1
TAIR:AT1G30350.1	InterPro:AmbAllergen	Unigene:At.51837	EMBL:DQ446309	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	RefSeq:NP_174324.1
PFAM:PF00544	PO:PO:0007611	PO:PO:0007616	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0025022	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF18	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	UniProt:Q9C8G4	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI00000482FC
SEG:seg	:	:	:	:	:

Description

Probable pectate lyase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8G4]

Coordinates

chr1:-:10709999..10711667

Molecular Weight (calculated)

40578.2 Da

IEP (calculated)

10.145

GRAVY (calculated)

-0.132

Length

368 amino acids

Sequence
(BLAST)

001: MASLVVIVSL LLAAFASPLL ETAHSYNVTA PRVSLNPIDA CWRRNPKWAT NRQALAHCAV GYGKAAIGGK NGPIYVVTNP SDNPTRPSPG TLRYAVSQPK
101: PLWITFARDM VIVLKSQLMI NSYKTIDGRG AKVEIANGPC LRIRQVKHVI IHGISIHDCK ADPNGMDGDG IRVFQSTHVW IDHCFLSRCH DGLIDVIVSS
201: TAVTISNNYF TQHDKVMLLG HDDSYMGDKD MRVTIAFNTF GPGLIERMPR VRRGYAHVAN NRYEKWQMYA IGGSANPIIF SEGNYFVAPE KRSSKQVTKR
301: MMAGPDSKRW KWGTSRDVFM NGAFFGPPGV IVRPLYKGGE GFRVAHGSLV PSLTSSAGPL RCYVGRIC

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.