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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • nucleus 1
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78607 Canola endoplasmic reticulum, extracellular 87.08 86.53
Bra006279.1-P Field mustard endoplasmic reticulum, extracellular 87.08 86.53
CDX70590 Canola endoplasmic reticulum, extracellular 86.86 86.32
CDX85564 Canola extracellular 85.81 85.62
Bra023504.1-P Field mustard extracellular 86.02 84.41
CDX69550 Canola endoplasmic reticulum, extracellular 89.19 84.37
Bra008721.1-P Field mustard endoplasmic reticulum, extracellular 89.19 84.37
CDY63769 Canola extracellular 85.59 84.34
CDY66593 Canola endoplasmic reticulum, extracellular 88.77 83.97
AT3G01270.1 Thale cress endoplasmic reticulum, extracellular 80.3 79.79
VIT_14s0108g00030.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 57.63 61.96
VIT_01s0026g01670.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 56.99 60.72
GSMUA_Achr10P... Banana cytosol 43.86 59.83
TraesCS4A01G385700.1 Wheat cytosol 27.75 59.82
GSMUA_Achr6P00830_001 Banana endoplasmic reticulum, extracellular 53.39 57.67
VIT_01s0026g01680.t01 Wine grape endoplasmic reticulum, extracellular 53.39 56.88
KRH18498 Soybean endoplasmic reticulum, extracellular, vacuole 52.75 56.21
GSMUA_Achr2P16830_001 Banana endoplasmic reticulum, extracellular 52.12 56.16
Solyc02g087670.2.1 Tomato extracellular 52.97 56.05
PGSC0003DMT400003310 Potato extracellular 52.54 55.61
KRG93502 Soybean extracellular 51.91 55.3
KRH01130 Soybean extracellular 51.27 55.0
PGSC0003DMT400017863 Potato extracellular 51.48 54.98
OQU75805 Sorghum mitochondrion 51.27 54.75
GSMUA_Achr10P... Banana extracellular 45.13 54.62
PGSC0003DMT400014086 Potato extracellular 51.69 54.59
Solyc03g058890.2.1 Tomato extracellular 51.91 54.57
Os06t0144200-01 Rice extracellular, plasma membrane 51.48 54.0
Zm00001d000216_P001 Maize golgi, vacuole 50.0 53.88
AT5G48900.1 Thale cress extracellular 47.46 53.72
Os02t0214400-01 Rice plasma membrane 50.64 53.59
HORVU6Hr1G038630.1 Barley extracellular 45.97 53.58
EER88571 Sorghum endoplasmic reticulum, plasma membrane 51.48 53.52
PGSC0003DMT400017862 Potato endoplasmic reticulum, extracellular 44.7 53.15
TraesCS7A01G086600.1 Wheat endoplasmic reticulum, extracellular 50.42 53.12
AT3G07010.1 Thale cress endoplasmic reticulum, extracellular, vacuole 46.82 53.12
EES06507 Sorghum golgi, vacuole 49.79 52.81
Os06t0583900-01 Rice plasma membrane 50.0 52.68
AT1G67750.1 Thale cress endoplasmic reticulum, vacuole 45.34 52.45
AT2G02720.1 Thale cress extracellular, vacuole 50.21 52.09
AT1G14420.1 Thale cress endoplasmic reticulum 50.64 52.07
TraesCS6D01G170500.1 Wheat golgi 46.82 52.0
Zm00001d046389_P007 Maize endoplasmic reticulum, extracellular 47.67 51.96
AT4G24780.1 Thale cress endoplasmic reticulum, extracellular 44.92 51.96
TraesCS6B01G211900.1 Wheat extracellular, golgi, vacuole 46.61 51.76
EER87830 Sorghum endoplasmic reticulum, extracellular, vacuole 50.85 51.61
TraesCS7A01G365700.1 Wheat endoplasmic reticulum, extracellular, vacuole 48.52 51.58
HORVU7Hr1G085860.1 Barley endoplasmic reticulum, extracellular, vacuole 48.52 51.58
TraesCS7D01G356700.1 Wheat extracellular 48.31 51.35
TraesCS7B01G261700.1 Wheat endoplasmic reticulum, extracellular, vacuole 48.09 51.13
Os06t0144900-01 Rice mitochondrion 51.06 50.95
AT1G04680.1 Thale cress extracellular 46.4 50.81
Zm00001d036158_P001 Maize endoplasmic reticulum, extracellular, vacuole 48.73 50.77
Solyc03g058910.2.1 Tomato extracellular, golgi 42.37 50.25
AT5G63180.1 Thale cress plastid 45.97 50.23
PGSC0003DMT400014085 Potato extracellular, golgi 42.16 50.0
AT4G13210.2 Thale cress endoplasmic reticulum, extracellular 46.19 49.77
Zm00001d036945_P001 Maize endoplasmic reticulum 44.28 49.76
AT3G24670.1 Thale cress endoplasmic reticulum, extracellular 45.97 49.32
AT3G27400.2 Thale cress endoplasmic reticulum, vacuole 43.43 49.28
TraesCS6A01G184500.2 Wheat extracellular, golgi, vacuole 47.46 48.38
AT4G13710.1 Thale cress endoplasmic reticulum, extracellular, vacuole 47.67 47.87
AT3G24230.1 Thale cress endoplasmic reticulum, golgi, vacuole 45.76 47.79
AT1G11920.1 Thale cress endoplasmic reticulum, extracellular 38.77 47.66
HORVU7Hr1G019500.1 Barley mitochondrion 51.69 46.92
AT4G22080.1 Thale cress extracellular 38.56 46.19
AT4G22090.1 Thale cress extracellular 37.08 44.42
AT1G30350.1 Thale cress extracellular 34.53 44.29
AT5G55720.1 Thale cress endoplasmic reticulum, extracellular 34.75 41.84
AT3G53190.1 Thale cress extracellular 41.31 40.37
AT3G54920.1 Thale cress extracellular 41.1 38.72
GSMUA_Achr7P08840_001 Banana nucleus 52.54 37.01
Solyc02g067450.2.1 Tomato extracellular 47.88 36.69
AT5G04310.1 Thale cress plasma membrane 40.25 36.68
Protein Annotations
KEGG:00040+4.2.2.2Gene3D:2.160.20.10MapMan:21.3.5.2ArrayExpress:AT5G15110EnsemblPlantsGene:AT5G15110RefSeq:AT5G15110
TAIR:AT5G15110RefSeq:AT5G15110-TAIR-GEnsemblPlants:AT5G15110.1TAIR:AT5G15110.1InterPro:AmbAllergenGO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009056
GO:GO:0009987GO:GO:0016829GO:GO:0030570GO:GO:0045490GO:GO:0046872InterPro:IPR012334
PFAM:PF00544PFAM:PF04431PO:PO:0001016PO:PO:0001017PO:PO:0001185PO:PO:0007611
PO:PO:0007616PO:PO:0009009PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0025022PO:PO:0025195PO:PO:0025281PRINTS:PR00807PANTHER:PTHR31683
PANTHER:PTHR31683:SF7InterPro:Pec_lyaseInterPro:Pec_lyase_NInterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00656
SUPFAM:SSF51126SignalP:SignalP-noTMUniParc:UPI0001A7B150SEG:seg::
Description
Pectate lyase family protein [Source:TAIR;Acc:AT5G15110]
Coordinates
chr5:+:4895750..4897966
Molecular Weight (calculated)
53840.0 Da
IEP (calculated)
9.365
GRAVY (calculated)
-0.637
Length
472 amino acids
Sequence
(BLAST)
001: MEMVRLSKLM FTFCIAVLIP TIRGNISELD EYWSQRADEA REFTLQAYHS DPYEIVDHFH ERHYDNSTDV TTPEEDGDAK PEEEEKEFIE MLGSSTNSTR
101: RSLRGKGKGK WSKLKGPCTA SNPIDKCWRC RSDWAKRRKK LTRCVRGFGH RTTGGKRGRI YVVTSNLDED MVNPKPGTLR HAVIQKEPLW IIFKNDMSIR
201: LNQELLINSH KTIDARGANV HVAHGAGITM QFVKNVVIHG LHIHHISESS GGMIRDSVDH FGMRTRADGD GLSIYGSSNI WLDHISMSKC QDGLIDAIVG
301: STGITISNSH FTHHNDVMLL GAQNTNEADK HMQVTVAYNH FGKGLVQRMP RIRWGFVHVV NNDYTHWELY AIGGSQGPTI LSHGNRFIAP PHKPHYREVT
401: KRDYASEDEW KHWNWRSDKD VFMNGAYFRQ SGNPQYKCAH TRQQMIKPKN GLAVSKLTKY AGALDCRVGR RC
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.