Factsheet for TraesCS4A01G385700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G086600.1	Wheat	endoplasmic reticulum, extracellular	89.5	43.75
Zm00001d000216_P001	Maize	golgi, vacuole	81.28	40.64
Os06t0144200-01	Rice	extracellular, plasma membrane	81.74	39.78
OQU75805	Sorghum	mitochondrion	79.91	39.59
HORVU7Hr1G019500.1	Barley	mitochondrion	89.95	37.88
GSMUA_Achr10P...	Banana	cytosol	59.36	37.57
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	66.21	33.18
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	65.3	32.65
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	64.38	32.41
KRH63402	Soybean	extracellular	63.47	31.95
PGSC0003DMT400046723	Potato	endoplasmic reticulum, golgi, vacuole	63.47	31.95
KRH74782	Soybean	extracellular	65.3	31.92
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	57.53	31.74
KRH69345	Soybean	extracellular	64.38	31.54
GSMUA_Achr10P...	Banana	extracellular	56.16	31.54
KRH54508	Soybean	extracellular	47.95	31.53
VIT_17s0000g05740.t01	Wine grape	extracellular	61.64	31.47
PGSC0003DMT400083135	Potato	extracellular	62.1	31.26
Solyc06g071020.2.1	Tomato	extracellular	62.1	31.26
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	62.56	31.21
KRH45851	Soybean	extracellular	63.93	31.04
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	62.56	30.93
TraesCS7A01G365700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	61.64	30.41
PGSC0003DMT400003310	Potato	extracellular	61.64	30.27
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	60.27	30.07
PGSC0003DMT400002241	Potato	extracellular	60.27	30.07
Solyc02g087670.2.1	Tomato	extracellular	60.73	29.82
KRH18498	Soybean	endoplasmic reticulum, extracellular, vacuole	60.27	29.8
Bra026832.1-P	Field mustard	extracellular	61.19	29.65
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	59.82	29.57
CDY17432	Canola	extracellular	61.64	29.41
CDY04133	Canola	extracellular	61.64	29.41
Bra017412.1-P	Field mustard	extracellular	61.64	29.41
KRG93502	Soybean	extracellular	58.9	29.12
PGSC0003DMT400014085	Potato	extracellular, golgi	52.51	28.89
Solyc03g058910.2.1	Tomato	extracellular, golgi	52.51	28.89
CDX96854	Canola	endoplasmic reticulum, extracellular, plasma membrane	60.27	28.82
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	60.27	28.82
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	59.82	28.67
KRH01130	Soybean	extracellular	57.53	28.64
PGSC0003DMT400014086	Potato	extracellular	58.45	28.64
CDY68729	Canola	endoplasmic reticulum, extracellular, plasma membrane	59.82	28.6
AT2G02720.1	Thale cress	extracellular, vacuole	59.36	28.57
AT1G14420.1	Thale cress	endoplasmic reticulum	59.82	28.54
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	61.64	28.42
CDX78607	Canola	endoplasmic reticulum, extracellular	61.64	28.42
CDX70590	Canola	endoplasmic reticulum, extracellular	61.64	28.42
TraesCS6A01G139800.1	Wheat	endoplasmic reticulum, extracellular, vacuole	48.86	28.31
Solyc03g058890.2.1	Tomato	extracellular	57.99	28.29
PGSC0003DMT400017863	Potato	extracellular	57.08	28.28
CDY45202	Canola	extracellular	58.45	27.89
AT5G15110.1	Thale cress	endoplasmic reticulum, extracellular	59.82	27.75
Bra026221.1-P	Field mustard	endoplasmic reticulum	57.99	27.73
Bra024811.1-P	Field mustard	extracellular	57.99	27.67
CDY39314	Canola	extracellular	57.99	27.67
CDY03043	Canola	extracellular	57.99	27.67
TraesCS6A01G184500.2	Wheat	extracellular, golgi, vacuole	58.45	27.65
CDX91953	Canola	endoplasmic reticulum, extracellular	59.36	27.6
CDX74293	Canola	endoplasmic reticulum, extracellular	59.36	27.6
CDX85564	Canola	extracellular	59.36	27.48
CDY28691	Canola	endoplasmic reticulum, extracellular, vacuole	58.45	27.29
CDY66593	Canola	endoplasmic reticulum, extracellular	62.1	27.25
CDY63769	Canola	extracellular	59.36	27.14
CDX81636	Canola	endoplasmic reticulum	59.82	27.07
CDX69550	Canola	endoplasmic reticulum, extracellular	61.64	27.05
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	61.64	27.05
Bra023504.1-P	Field mustard	extracellular	59.36	27.03
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	57.99	26.96
CDY53552	Canola	extracellular	60.27	26.67
AT3G01270.1	Thale cress	endoplasmic reticulum, extracellular	57.53	26.53
Solyc05g007080.2.1	Tomato	extracellular	54.34	26.1
PGSC0003DMT400045436	Potato	extracellular	54.34	25.93
TraesCS2A01G016500.1	Wheat	golgi	55.71	25.36
TraesCS1A01G143600.1	Wheat	extracellular	54.79	25.0
GSMUA_Achr7P08840_001	Banana	nucleus	64.38	21.04
Solyc02g067450.2.1	Tomato	extracellular	56.62	20.13
CDY04136	Canola	mitochondrion, nucleus	0.91	1.32

Protein Annotations

EnsemblPlants:TraesCS4A01G385700.1	EnsemblPlantsGene:TraesCS4A01G385700	Gene3D:2.160.20.10	InterPro:AmbAllergen	InterPro:IPR012334	InterPro:Pec_lyase
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	KEGG:00040+4.2.2.2	PANTHER:PTHR31683	PANTHER:PTHR31683:SF60	PFAM:PF00544
PRINTS:PR00807	SMART:SM00656	SUPFAM:SSF51126	MapMan:21.3.5.2	:	:

Description

No Description!

Coordinates

chr4A:-:662816111..662816770

Molecular Weight (calculated)

24630.1 Da

IEP (calculated)

7.659

GRAVY (calculated)

-0.502

Length

219 amino acids

Sequence
(BLAST)

001: MIRDSKHHYG WRTQSDGDGM SILSSSNVWI DYVSMSSCAD GLIDVVSGST AVTISNSHFT KHDHVMLFGA SNAEEQDRMM QVTVAFNHFG KGLVQRMPRC
101: RFGFFHVVKN DYTHWQMYAI GGNRSPTIIS QGNRFMAPDD GNAKEVTKRE YAPYTEYKDW VWKSQGDVMM NGAFFNESGG QNERAYGKMD LIPAKHGKYV
201: GQLTQLAGTL DCHVGKPCY

Best Arabidopsis Sequence Match ( AT1G14420.1 )
(BLAST)

001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC

Arabidopsis Description

AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.