Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 6
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400046723 | Potato | endoplasmic reticulum, golgi, vacuole | 97.24 | 97.24 |
| Solyc06g071020.2.1 | Tomato | extracellular | 73.33 | 73.33 |
| VIT_17s0000g05740.t01 | Wine grape | extracellular | 69.66 | 70.63 |
| TraesCS4A01G385700.1 | Wheat | cytosol | 32.41 | 64.38 |
| KRH63402 | Soybean | extracellular | 63.22 | 63.22 |
| GSMUA_Achr6P00830_001 | Banana | endoplasmic reticulum, extracellular | 62.76 | 62.47 |
| GSMUA_Achr10P... | Banana | extracellular | 55.4 | 61.79 |
| GSMUA_Achr2P16830_001 | Banana | endoplasmic reticulum, extracellular | 61.84 | 61.42 |
| KRH54508 | Soybean | extracellular | 46.9 | 61.26 |
| Solyc03g058890.2.1 | Tomato | extracellular | 61.15 | 59.24 |
| Solyc01g010740.2.1 | Tomato | endoplasmic reticulum, extracellular | 59.31 | 58.77 |
| GSMUA_Achr10P... | Banana | cytosol | 46.67 | 58.67 |
| Solyc02g087670.2.1 | Tomato | extracellular | 59.77 | 58.3 |
| HORVU6Hr1G038630.1 | Barley | extracellular | 53.79 | 57.78 |
| TraesCS7D01G356700.1 | Wheat | extracellular | 57.7 | 56.53 |
| OQU75805 | Sorghum | mitochondrion | 57.24 | 56.33 |
| Zm00001d000216_P001 | Maize | golgi, vacuole | 56.55 | 56.16 |
| TraesCS7A01G365700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 57.24 | 56.08 |
| EES06507 | Sorghum | golgi, vacuole | 57.24 | 55.96 |
| TraesCS7B01G261700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 57.01 | 55.86 |
| Os02t0214400-01 | Rice | plasma membrane | 57.24 | 55.83 |
| Os06t0144200-01 | Rice | extracellular, plasma membrane | 57.24 | 55.33 |
| Solyc03g111690.2.1 | Tomato | nucleus | 51.03 | 55.09 |
| HORVU7Hr1G085860.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 56.09 | 54.95 |
| TraesCS7A01G086600.1 | Wheat | endoplasmic reticulum, extracellular | 56.55 | 54.91 |
| Os06t0583900-01 | Rice | plasma membrane | 56.09 | 54.46 |
| TraesCS6D01G170500.1 | Wheat | golgi | 53.1 | 54.35 |
| TraesCS6B01G211900.1 | Wheat | extracellular, golgi, vacuole | 52.87 | 54.12 |
| Solyc05g014000.2.1 | Tomato | extracellular, nucleus | 49.89 | 54.11 |
| EER88571 | Sorghum | endoplasmic reticulum, plasma membrane | 56.09 | 53.74 |
| Zm00001d046389_P007 | Maize | endoplasmic reticulum, extracellular | 53.33 | 53.58 |
| Solyc03g058910.2.1 | Tomato | extracellular, golgi | 48.97 | 53.52 |
| Zm00001d036158_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 54.48 | 52.32 |
| Solyc06g071840.1.1 | Tomato | vacuole | 42.99 | 52.09 |
| Solyc02g093580.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 48.05 | 51.73 |
| Solyc05g007080.2.1 | Tomato | extracellular | 53.33 | 50.88 |
| TraesCS6A01G184500.2 | Wheat | extracellular, golgi, vacuole | 54.02 | 50.76 |
| Solyc06g083580.2.1 | Tomato | nucleus | 50.11 | 50.23 |
| Os06t0144900-01 | Rice | mitochondrion | 54.48 | 50.11 |
| EER87830 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 53.1 | 49.68 |
| Solyc09g061890.2.1 | Tomato | endoplasmic reticulum, extracellular | 50.11 | 49.66 |
| Zm00001d036945_P001 | Maize | endoplasmic reticulum | 47.82 | 49.52 |
| Solyc09g091430.2.1 | Tomato | nucleus | 49.89 | 48.12 |
| HORVU7Hr1G019500.1 | Barley | mitochondrion | 56.55 | 47.31 |
| Solyc11g008140.1.1 | Tomato | plasma membrane | 47.82 | 46.33 |
| Solyc09g008380.2.1 | Tomato | nucleus | 47.13 | 42.44 |
| Solyc03g071570.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 48.51 | 41.87 |
| GSMUA_Achr7P08840_001 | Banana | nucleus | 63.45 | 41.19 |
| Solyc05g055510.2.1 | Tomato | plasma membrane | 45.98 | 40.49 |
| Solyc02g067450.2.1 | Tomato | extracellular | 55.4 | 39.12 |
| Solyc02g080910.2.1 | Tomato | extracellular | 41.84 | 23.98 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | InterPro:AmbAllergen | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 | UniProt:K4BKG8 |
| PFAM:PF00544 | PFAM:PF04431 | PRINTS:PR00807 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF7 | InterPro:Pec_lyase |
| InterPro:Pec_lyase_N | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00656 | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
| EnsemblPlantsGene:Solyc03g113150.2 | EnsemblPlants:Solyc03g113150.2.1 | TMHMM:TMhelix | UniParc:UPI0002767A37 | SEG:seg | : |
Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4BKG8]
Coordinates
chr3:+:63409275..63411604
Molecular Weight (calculated)
48544.5 Da
IEP (calculated)
9.945
GRAVY (calculated)
-0.317
Length
435 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLPKRNLFL FFVLVVLVVS IEAHIKEFDE VWKKRAQQAK KAARHAYNPN PKIVADHLNY QVDKAVRGSK SRRRDLQRYS GKCMATNPID QCWRCDPNWA
101: RNRMKLTDCV LGFGRKTTGG KGGKIYVVMD NSDNELVNPK PGTLRHAVIQ PEPLWIIFAK NMVIKLNQEL IMTSNKTIDA RGRQVHIAHG GGLMLQFIHN
201: VIISNLHIHD TKAGAGGLIR DSVSHYGYRS KSDGDGISIF GSTNVWIDHI SMSNCQDGLI DAVEGSTAIT ISNCHFTKHN DVMLFGASDT ASGDSVMQIT
301: LAFNHFGHGL TQRMPRVRWG FVHVVNNDYT HWLMYAIGGS MHPTILSQGN RFIAPPNPNA KEVTKRDYAP ENVWKNWVWK SQGDLMMNGA FFVESGDPKH
401: AFLKGPDMIT SKPGSSVSSL TQFSGSLKCI EGRPC
101: RNRMKLTDCV LGFGRKTTGG KGGKIYVVMD NSDNELVNPK PGTLRHAVIQ PEPLWIIFAK NMVIKLNQEL IMTSNKTIDA RGRQVHIAHG GGLMLQFIHN
201: VIISNLHIHD TKAGAGGLIR DSVSHYGYRS KSDGDGISIF GSTNVWIDHI SMSNCQDGLI DAVEGSTAIT ISNCHFTKHN DVMLFGASDT ASGDSVMQIT
301: LAFNHFGHGL TQRMPRVRWG FVHVVNNDYT HWLMYAIGGS MHPTILSQGN RFIAPPNPNA KEVTKRDYAP ENVWKNWVWK SQGDLMMNGA FFVESGDPKH
401: AFLKGPDMIT SKPGSSVSSL TQFSGSLKCI EGRPC
001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
Arabidopsis Description
AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.