Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
- nucleus 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400040893 | Potato | endoplasmic reticulum, vacuole | 97.95 | 97.95 |
| Solyc06g083580.2.1 | Tomato | nucleus | 80.64 | 81.57 |
| Solyc09g091430.2.1 | Tomato | nucleus | 76.31 | 74.28 |
| Solyc05g014000.2.1 | Tomato | extracellular, nucleus | 65.15 | 71.32 |
| Solyc03g111690.2.1 | Tomato | nucleus | 65.15 | 70.97 |
| Solyc06g071840.1.1 | Tomato | vacuole | 56.49 | 69.08 |
| Solyc02g093580.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 61.96 | 67.33 |
| Solyc11g008140.1.1 | Tomato | plasma membrane | 56.26 | 55.01 |
| Solyc01g010740.2.1 | Tomato | endoplasmic reticulum, extracellular | 51.48 | 51.48 |
| Solyc06g071020.2.1 | Tomato | extracellular | 50.34 | 50.8 |
| Solyc03g058890.2.1 | Tomato | extracellular | 51.71 | 50.56 |
| Solyc03g113150.2.1 | Tomato | endoplasmic reticulum, golgi, vacuole | 49.66 | 50.11 |
| Solyc09g008380.2.1 | Tomato | nucleus | 54.9 | 49.9 |
| Solyc05g055510.2.1 | Tomato | plasma membrane | 56.04 | 49.8 |
| Solyc02g087670.2.1 | Tomato | extracellular | 49.89 | 49.1 |
| Solyc03g058910.2.1 | Tomato | extracellular, golgi | 44.19 | 48.74 |
| Solyc03g071570.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 54.9 | 47.82 |
| Solyc05g007080.2.1 | Tomato | extracellular | 49.2 | 47.37 |
| Solyc02g067450.2.1 | Tomato | extracellular | 45.1 | 32.14 |
| Solyc02g080910.2.1 | Tomato | extracellular | 47.84 | 27.67 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | InterPro:AmbAllergen | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | InterPro:IPR012334 | UniProt:K4CU19 |
| PFAM:PF00544 | PRINTS:PR00807 | PANTHER:PTHR31683 | PANTHER:PTHR31683:SF34 | InterPro:Pec_lyase | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | SMART:SM00656 | SUPFAM:SSF51126 | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc09g061890.2 | EnsemblPlants:Solyc09g061890.2.1 |
| TMHMM:TMhelix | UniParc:UPI000276BD4B | SEG:seg | : | : | : |
Description
Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4CU19]
Coordinates
chr9:+:60618611..60622304
Molecular Weight (calculated)
48780.8 Da
IEP (calculated)
7.787
GRAVY (calculated)
-0.270
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIYWRSCLS LSALLILVLL VINVNPSHSA EEAEQFQSLK NLTMTNSLSE ENVPNHEHAV DDPEKVVSMV DMSIKNSTER RKLGFFSCGT GNPIDDCWRC
101: DRNWQRNRKR LADCAIGFGR NAIGGRDGKY YVVTDPNDDD PVNPRPGTLR HAVIQDRPLW IVFKRDMVIT LKQELIMNSF KTIDGRGVNV HIANGACITV
201: QFVTNIIIHG INIHDCKPTG NAMVRSSPSH FGWRTIADGD GISIFGSSHI WVDHNSLANC ADGLIDAIMG STAITISNNY FTHHNEVMLL GHSDSYVRDK
301: IMQVTIAYNH FGEGLIQRMP RCRHGYFHVV NNDYTHWEMY AIGGSASPTI NSQGNRYLAP ANPFAKQVTH RVEQSDVWKH WNWRSEGDLM LNGAFFTPSG
401: HGAAASYARA SSLAAKASSL VGTLTSNAGA LTCRRGYQC
101: DRNWQRNRKR LADCAIGFGR NAIGGRDGKY YVVTDPNDDD PVNPRPGTLR HAVIQDRPLW IVFKRDMVIT LKQELIMNSF KTIDGRGVNV HIANGACITV
201: QFVTNIIIHG INIHDCKPTG NAMVRSSPSH FGWRTIADGD GISIFGSSHI WVDHNSLANC ADGLIDAIMG STAITISNNY FTHHNEVMLL GHSDSYVRDK
301: IMQVTIAYNH FGEGLIQRMP RCRHGYFHVV NNDYTHWEMY AIGGSASPTI NSQGNRYLAP ANPFAKQVTH RVEQSDVWKH WNWRSEGDLM LNGAFFTPSG
401: HGAAASYARA SSLAAKASSL VGTLTSNAGA LTCRRGYQC
001: MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE VIQSSNSSTM AAIRKLKTEE FQSLNSSTMA ATRLDGEPQQ QQHAVADDPD MVADEVAKLV
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC
Arabidopsis Description
Probable pectate lyase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q944R1]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.