Factsheet for Solyc06g083580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
nucleus 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051938	Potato	endoplasmic reticulum, extracellular	97.93	92.39
Solyc09g061890.2.1	Tomato	endoplasmic reticulum, extracellular	81.57	80.64
Solyc09g091430.2.1	Tomato	nucleus	76.27	73.39
Solyc03g111690.2.1	Tomato	nucleus	64.75	69.73
Solyc05g014000.2.1	Tomato	extracellular, nucleus	63.36	68.58
Solyc06g071840.1.1	Tomato	vacuole	55.53	67.13
Solyc02g093580.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	61.98	66.58
Solyc11g008140.1.1	Tomato	plasma membrane	55.3	53.45
Solyc09g008380.2.1	Tomato	nucleus	56.45	50.72
Solyc03g113150.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	50.23	50.11
Solyc03g058890.2.1	Tomato	extracellular	51.38	49.67
Solyc01g010740.2.1	Tomato	endoplasmic reticulum, extracellular	49.54	48.97
Solyc06g071020.2.1	Tomato	extracellular	49.08	48.97
Solyc05g055510.2.1	Tomato	plasma membrane	55.3	48.58
Solyc02g087670.2.1	Tomato	extracellular	49.54	48.21
Solyc03g058910.2.1	Tomato	extracellular, golgi	43.78	47.74
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	54.84	47.22
Solyc05g007080.2.1	Tomato	extracellular	47.47	45.18
Solyc02g067450.2.1	Tomato	extracellular	44.24	31.17
Solyc02g080910.2.1	Tomato	extracellular	45.39	25.96

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	InterPro:IPR012334	UniProt:K4CAL3
PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF62	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc06g083580.2	EnsemblPlants:Solyc06g083580.2.1
TMHMM:TMhelix	UniParc:UPI000276B5DB	SEG:seg	:	:	:

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:K4CAL3]

Coordinates

chr6:+:48943373..48949400

Molecular Weight (calculated)

48292.1 Da

IEP (calculated)

7.436

GRAVY (calculated)

-0.256

Length

434 amino acids

Sequence
(BLAST)

001: MAAALRLSCL CFLQLLIVIV LFINSSADNS IEQAEQFQSL SNSTMTNRLS GNDELRHEHA EDDPEAIASM VDMSIRNSTE RRKLGYFSCR TGNPIDDCWR
101: CDRNWQRNRR RLADCSIGFG RNAIGGRDGR FYVVTDSGDD DPVNPRPGTL RHAVIQDEPL WIVFKRDMHI TLKQELIMNS FKTIDARGVN VHIANGACIT
201: IQFVTNIIIH GLHIHDCKPT GNALVRSSPS HYGWRTMADG DAISIFGSSH IWVDHNSLSN CADGLVDAIM GSTAITISNN YFTHHNEVIL LGHSDTYVRD
301: KVMQVTIAFN HFGEGLIQRM PRCRHGYFHV VNNDYTHWEM YAIGGSAAPT INSQGNRYLA PVNPFAKEVT KRVEPWEGSW RQWNWRSVGD LLLNGAYFTA
401: SGRAAPGSYA RASSLAAKSS SLVGMITSNA GALS

Best Arabidopsis Sequence Match ( AT3G07010.1 )
(BLAST)

001: MAVTKLILFA SALLLTALFI GVNASRSNET WHEHAVENPD EVAAMVDMSI RNSTERRRLG YFSCATGNPI DDCWRCDRKW QLRRKRLADC SIGFGRNAIG
101: GRDGRFYVVT DPGDDDPVNP IPGTLRHAVI QDEPLWIIFK RDMVITLKQE LIMNSFKTID GRGVNVHIAN GACLTIQYVT NIIVHGIHVH DCKPTGNAMV
201: RSSPSHYGFR SMADGDAISI FGSSHIWIDH NSLSNCADGL VDAVMSSTAI TVSNNFFTHH NEVMLLGHSD SYTRDKVMQV TIAYNHFGEG LIQRMPRCRH
301: GYFHVVNNDY THWEMYAIGG SAGPTINSQG NRFLAPVNPF AKEVTKREYT GESKWKHWNW RSEGDLFLNG AFFTRSGAGA GANYARASSL SAKSSSLVGT
401: MTSYSGALNC RAGRRC

Arabidopsis Description

Probable pectate lyase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Z8]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.