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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, extracellular

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 6
  • golgi 7
  • plastid 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, golgi
Any Predictor:nucleus, plastid, secretory
BaCelLo:secretory
EpiLoc:extracellular
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:extracellular, golgi, nucleus, plasma membrane, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400014085 Potato extracellular, golgi 96.23 96.23
TraesCS4A01G385700.1 Wheat cytosol 28.89 52.51
Solyc03g058890.2.1 Tomato extracellular 56.28 49.89
GSMUA_Achr10P... Banana extracellular 48.74 49.74
Solyc02g087670.2.1 Tomato extracellular 55.53 49.55
GSMUA_Achr10P... Banana cytosol 42.96 49.42
Solyc03g113150.2.1 Tomato endoplasmic reticulum, golgi, vacuole 53.52 48.97
VIT_01s0026g01670.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 54.27 48.76
HORVU6Hr1G038630.1 Barley extracellular 49.5 48.64
Solyc03g111690.2.1 Tomato nucleus 48.99 48.39
GSMUA_Achr2P16830_001 Banana endoplasmic reticulum, extracellular 53.02 48.17
VIT_14s0108g00030.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 52.76 47.84
GSMUA_Achr6P00830_001 Banana endoplasmic reticulum, extracellular 52.26 47.6
Solyc05g014000.2.1 Tomato extracellular, nucleus 47.74 47.38
Solyc06g071020.2.1 Tomato extracellular 51.76 47.36
VIT_01s0026g01680.t01 Wine grape endoplasmic reticulum, extracellular 52.51 47.18
Solyc01g010740.2.1 Tomato endoplasmic reticulum, extracellular 52.01 47.15
Solyc02g093580.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 47.74 47.03
EES06507 Sorghum golgi, vacuole 52.51 46.97
KRH69345 Soybean extracellular 52.51 46.76
KRH74782 Soybean extracellular 52.51 46.65
KRH45851 Soybean extracellular 52.26 46.12
TraesCS7A01G086600.1 Wheat endoplasmic reticulum, extracellular 51.76 45.98
TraesCS6D01G170500.1 Wheat golgi 48.99 45.88
TraesCS6B01G211900.1 Wheat extracellular, golgi, vacuole 48.74 45.65
CDY68729 Canola endoplasmic reticulum, extracellular, plasma membrane 52.51 45.63
KRH18498 Soybean endoplasmic reticulum, extracellular, vacuole 50.75 45.6
KRG93502 Soybean extracellular 50.75 45.6
Os06t0144200-01 Rice extracellular, plasma membrane 51.51 45.56
CDX96854 Canola endoplasmic reticulum, extracellular, plasma membrane 52.26 45.41
Solyc06g071840.1.1 Tomato vacuole 40.95 45.4
Zm00001d046389_P007 Maize endoplasmic reticulum, extracellular 49.25 45.27
OQU75805 Sorghum mitochondrion 50.25 45.25
Bra016700.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 52.01 45.2
Bra026832.1-P Field mustard extracellular 51.26 45.13
KRH01130 Soybean extracellular 49.5 44.77
Zm00001d000216_P001 Maize golgi, vacuole 49.25 44.75
TraesCS7A01G365700.1 Wheat endoplasmic reticulum, extracellular, vacuole 49.75 44.59
Zm00001d036158_P001 Maize endoplasmic reticulum, extracellular, vacuole 50.75 44.59
Os02t0214400-01 Rice plasma membrane 49.75 44.39
TraesCS7D01G356700.1 Wheat extracellular 49.5 44.37
Bra017412.1-P Field mustard extracellular 51.01 44.23
CDY04133 Canola extracellular 51.01 44.23
Solyc09g061890.2.1 Tomato endoplasmic reticulum, extracellular 48.74 44.19
TraesCS7B01G261700.1 Wheat endoplasmic reticulum, extracellular, vacuole 49.25 44.14
Bra026221.1-P Field mustard endoplasmic reticulum 50.75 44.1
AT1G14420.1 Thale cress endoplasmic reticulum 50.75 44.01
CDY39314 Canola extracellular 50.75 44.01
CDY17432 Canola extracellular 50.75 44.01
Solyc06g083580.2.1 Tomato nucleus 47.74 43.78
HORVU7Hr1G085860.1 Barley endoplasmic reticulum, extracellular, vacuole 48.74 43.69
Os06t0144900-01 Rice mitochondrion 51.76 43.55
Bra026583.1-P Field mustard endoplasmic reticulum, plasma membrane 50.0 43.54
EER88571 Sorghum endoplasmic reticulum, plasma membrane 49.5 43.39
Os06t0583900-01 Rice plasma membrane 48.74 43.3
AT2G02720.1 Thale cress extracellular, vacuole 49.25 43.08
Solyc09g091430.2.1 Tomato nucleus 48.74 43.02
CDX91953 Canola endoplasmic reticulum, extracellular 50.5 42.68
CDX74293 Canola endoplasmic reticulum, extracellular 50.5 42.68
CDY28691 Canola endoplasmic reticulum, extracellular, vacuole 50.25 42.64
EER87830 Sorghum endoplasmic reticulum, extracellular, vacuole 49.75 42.58
Solyc05g007080.2.1 Tomato extracellular 48.74 42.54
CDY03043 Canola extracellular 48.99 42.48
AT5G15110.1 Thale cress endoplasmic reticulum, extracellular 50.25 42.37
TraesCS6A01G184500.2 Wheat extracellular, golgi, vacuole 48.99 42.12
CDX85564 Canola extracellular 50.0 42.07
Bra001011.1-P Field mustard endoplasmic reticulum, extracellular 49.75 42.04
AT3G01270.1 Thale cress endoplasmic reticulum, extracellular 50.0 41.89
CDY45202 Canola extracellular 48.24 41.83
Bra024811.1-P Field mustard extracellular 48.24 41.83
CDX81636 Canola endoplasmic reticulum 50.75 41.74
CDY53552 Canola extracellular 51.76 41.62
CDX70590 Canola endoplasmic reticulum, extracellular 49.5 41.47
CDX78607 Canola endoplasmic reticulum, extracellular 49.5 41.47
Bra006279.1-P Field mustard endoplasmic reticulum, extracellular 49.5 41.47
Solyc02g067450.2.1 Tomato extracellular 64.07 41.4
Bra023504.1-P Field mustard extracellular 50.0 41.37
CDY63769 Canola extracellular 49.5 41.13
CDX69550 Canola endoplasmic reticulum, extracellular 51.51 41.08
Bra008721.1-P Field mustard endoplasmic reticulum, extracellular 51.51 41.08
CDY66593 Canola endoplasmic reticulum, extracellular 51.26 40.88
Solyc11g008140.1.1 Tomato plasma membrane 45.98 40.76
Zm00001d036945_P001 Maize endoplasmic reticulum 42.46 40.24
HORVU7Hr1G019500.1 Barley mitochondrion 51.76 39.62
Solyc09g008380.2.1 Tomato nucleus 46.98 38.72
Solyc05g055510.2.1 Tomato plasma membrane 45.73 36.84
Solyc03g071570.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 46.23 36.51
GSMUA_Achr7P08840_001 Banana nucleus 51.76 30.75
Solyc02g080910.2.1 Tomato extracellular 42.21 22.13
CDY04136 Canola mitochondrion, nucleus 0.25 0.66
Protein Annotations
KEGG:00040+4.2.2.2Gene3D:2.160.20.10MapMan:21.3.5.2InterPro:AmbAllergenProteinID:CAA33524.1GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009056
GO:GO:0009987GO:GO:0016829GO:GO:0030570GO:GO:0045490GO:GO:0046872InterPro:IPR012334
UniProt:P15721PFAM:PF00544PRINTS:PR00807PANTHER:PTHR31683PANTHER:PTHR31683:SF7InterPro:Pec_lyase
InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00656SUPFAM:SSF51126EnsemblPlantsGene:Solyc03g058910.2EnsemblPlants:Solyc03g058910.2.1
TMHMM:TMhelixUniParc:UPI000013154A::::
Description
LAT56Probable pectate lyase P56 [Source:UniProtKB/Swiss-Prot;Acc:P15721]
Coordinates
chr3:+:26603230..26604964
Molecular Weight (calculated)
44566.3 Da
IEP (calculated)
8.386
GRAVY (calculated)
-0.264
Length
398 amino acids
Sequence
(BLAST)
001: MEYSYRTKIN VLFIVLILFV FAALGTAINA PRRKLTKKYR GPCMAVNSID KCWRCDPFWA EDRQKMADCA LGFGINAMGG KYGPYYIVTD NSDDDVVDPK
101: PGTLRFGVIQ KGPLWITFAR SMRIRLTREL IVSSNKTIDG RGKYVHIANG AGIKIQSASN VIISNLRIHN IVPTAGGLLR ESDDHLGLRG ADEGDAISIF
201: NSHDIWIDHI SMSRATDGLI DAVAGSTNIT ISNCHFTDHE KVMLFGANDH AEEDRGMKIT LAYNHFGKRL DQRMPRCRFG FFHLVNNDYT HWERYAIGGS
301: SGATIISQGN RFIAEDKLLV KEVTYREKST SSVEEWMKWT WITDGDDFEN GATFTPSGDQ NLLSKIDHLN LIQPEPSSKV GLLTKFSGAL SCKIRRPC
Best Arabidopsis Sequence Match ( AT1G14420.1 )
(BLAST)
001: MAAAFLNLGG YVFVFFSSFL AIVAPQVRGN VAVFDSYWTQ RQSDALKQTI GSYDPHPLNV TNHFNYHVNI AVDASESRND TRRELTQVRS GRKTHKSSGK
101: CLAYNPIDNC WRCDRNWANN RKKLADCVLG FGRRTTGGKD GPIYVVKDAS DNDLINPKPG TLRHAVTRDG PLWIIFARSM IIKLQQELMI TSDKTIDGRG
201: ARVYIMEGAG LTLQFVNNVI IHNIYVKHIV PGNGGLIRDS EAHIGLRTKS DGDGISLFGA TNIWIDHVSM TRCADGMIDA IDGSTAVTIS NSHFTDHQEV
301: MLFGARDEHV IDKKMQITVA FNHFGKRLEQ RMPRCRYGTI HVVNNDYTHW EMYAIGGNMN PTIISQGNRF IAPPNEEAKQ ITKREYTPYG EWKSWNWQSE
401: GDYFLNGAYF VQSGKANAWS SKPKTPLPNK FTIRPKPGTM VRKLTMDAGV LGCKLGEAC
Arabidopsis Description
AT59Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.