Factsheet for Bra006279.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 6
nucleus 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, golgi, mitochondrion, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78607	Canola	endoplasmic reticulum, extracellular	100.0	100.0
AT5G15110.1	Thale cress	endoplasmic reticulum, extracellular	86.53	87.08
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	88.0	83.77
Bra023504.1-P	Field mustard	extracellular	84.21	83.16
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	75.79	76.43
TraesCS4A01G385700.1	Wheat	cytosol	28.42	61.64
GSMUA_Achr10P...	Banana	cytosol	44.21	60.69
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	56.0	60.05
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	55.37	59.91
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	53.89	58.58
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	53.26	57.76
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	53.47	57.34
KRH18498	Soybean	endoplasmic reticulum, extracellular, vacuole	52.63	56.43
PGSC0003DMT400003310	Potato	extracellular	52.84	56.28
KRG93502	Soybean	extracellular	52.42	56.21
Solyc02g087670.2.1	Tomato	extracellular	52.63	56.05
Bra036155.1-P	Field mustard	extracellular	48.84	55.5
KRH01130	Soybean	extracellular	51.37	55.45
GSMUA_Achr10P...	Banana	extracellular	45.47	55.38
PGSC0003DMT400017863	Potato	extracellular	51.37	55.2
Bra020672.1-P	Field mustard	extracellular	48.42	55.16
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	47.58	54.72
PGSC0003DMT400014086	Potato	extracellular	51.37	54.59
HORVU6Hr1G038630.1	Barley	extracellular	46.53	54.57
Solyc03g058890.2.1	Tomato	extracellular	51.58	54.57
Os06t0144200-01	Rice	extracellular, plasma membrane	51.58	54.44
TraesCS7A01G086600.1	Wheat	endoplasmic reticulum, extracellular	51.16	54.24
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	46.32	54.19
Bra017412.1-P	Field mustard	extracellular	52.21	54.03
Bra033980.1-P	Field mustard	extracellular	46.11	53.94
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	48.0	53.9
Zm00001d000216_P001	Maize	golgi, vacuole	49.47	53.65
PGSC0003DMT400017862	Potato	endoplasmic reticulum, extracellular	44.84	53.65
OQU75805	Sorghum	mitochondrion	49.89	53.62
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	46.53	53.51
Bra035852.1-P	Field mustard	extracellular	46.11	53.41
Os02t0214400-01	Rice	plasma membrane	50.11	53.36
Bra026832.1-P	Field mustard	extracellular	50.74	53.32
Bra004073.1-P	Field mustard	extracellular	45.68	53.32
Bra024811.1-P	Field mustard	extracellular	51.37	53.16
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	50.95	52.95
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	45.05	52.84
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	50.95	52.84
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	45.05	52.71
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	45.05	52.71
Bra039081.1-P	Field mustard	extracellular, plastid	45.47	52.43
Bra025274.1-P	Field mustard	extracellular	45.47	52.43
EER88571	Sorghum	endoplasmic reticulum, plasma membrane	50.11	52.42
Os06t0583900-01	Rice	plasma membrane	49.26	52.23
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	47.16	51.97
TraesCS6D01G170500.1	Wheat	golgi	46.32	51.76
Bra032494.1-P	Field mustard	extracellular	46.95	51.74
Bra015341.1-P	Field mustard	extracellular	46.95	51.74
EES06507	Sorghum	golgi, vacuole	48.42	51.69
TraesCS6B01G211900.1	Wheat	extracellular, golgi, vacuole	46.11	51.53
Bra026221.1-P	Field mustard	endoplasmic reticulum	49.47	51.31
Zm00001d046389_P007	Maize	endoplasmic reticulum, extracellular	46.53	51.04
Bra033008.1-P	Field mustard	extracellular	42.74	51.01
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	48.42	51.0
EER87830	Sorghum	endoplasmic reticulum, extracellular, vacuole	49.68	50.75
HORVU7Hr1G085860.1	Barley	endoplasmic reticulum, extracellular, vacuole	47.16	50.45
Os06t0144900-01	Rice	mitochondrion	50.11	50.32
TraesCS7A01G365700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	46.95	50.23
TraesCS7D01G356700.1	Wheat	extracellular	46.95	50.23
Zm00001d036158_P001	Maize	endoplasmic reticulum, extracellular, vacuole	47.79	50.11
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	43.79	50.0
TraesCS7B01G261700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	46.53	49.77
Bra019729.1-P	Field mustard	extracellular	38.74	49.73
PGSC0003DMT400014085	Potato	extracellular, golgi	41.47	49.5
Solyc03g058910.2.1	Tomato	extracellular, golgi	41.47	49.5
Zm00001d036945_P001	Maize	endoplasmic reticulum	43.16	48.81
Bra015000.1-P	Field mustard	golgi, plasma membrane	45.47	48.32
TraesCS6A01G184500.2	Wheat	extracellular, golgi, vacuole	46.95	48.16
HORVU7Hr1G019500.1	Barley	mitochondrion	52.0	47.5
Bra019730.1-P	Field mustard	extracellular	38.11	47.01
Bra013585.1-P	Field mustard	extracellular	37.89	45.8
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	46.95	45.33
Bra020859.1-P	Field mustard	extracellular	37.26	44.81
Bra035588.1-P	Field mustard	extracellular	35.79	43.81
Bra006976.1-P	Field mustard	cytosol	42.11	43.76
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	43.37	41.96
Bra012756.1-P	Field mustard	extracellular	34.32	41.9
Bra028549.1-P	Field mustard	plasma membrane	42.95	41.63
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	42.32	41.02
Bra005799.1-P	Field mustard	extracellular, golgi	40.63	37.7
GSMUA_Achr7P08840_001	Banana	nucleus	52.84	37.46
Solyc02g067450.2.1	Tomato	extracellular	48.0	37.01
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	40.21	36.45

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra006279	EnsemblPlants:Bra006279.1
EnsemblPlants:Bra006279.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4CPZ0	PFAM:PF00544	PFAM:PF04431	PRINTS:PR00807
PANTHER:PTHR31683	PANTHER:PTHR31683:SF7	InterPro:Pec_lyase	InterPro:Pec_lyase_N	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI000253FBB8	SEG:seg	:

Description

AT5G15110 (E=4e-228) | lyase/ pectate lyase

Coordinates

chrA03:+:2815155..2817015

Molecular Weight (calculated)

54214.5 Da

IEP (calculated)

8.682

GRAVY (calculated)

-0.572

Length

475 amino acids

Sequence
(BLAST)

001: MVMARLLKLM LVLCIVGLIP TIRADMSELD EYWSGRADEA REFTLQAYHS DPYEIIDHFH ERHYDNSTDV TPTEEDNNTK PEEVENEVIE MVGSGDNSTN
101: STRRSLRGKG KGKWSKLKGP CTASNPIDKC WRCRKNWSKR RKKLVKCVRG FGHMTVGGKH GRIYVVTSNL DEDMVNPEPG TLRHAVIQKE PLWIIFKNDM
201: SIRLNQELLI NSFKTIDARG ANVHIAHGAG VTMQFVRHVI IHGLHIHHIS ESSGGMIRDS ADHFGMRTRA DGDGLSIYGS SNIWLDHVSM SQCQDGLIDA
301: IVGSTAITIS NSHFTHHNDV MLLGAQNTYD LDKKMQVTVA YNHFGKGLVQ RMPRIRWGFV HVVNNDYTHW ELYAIGGSQS PTILSQGNRF IAPPHLPHYR
401: EVTKRDYAPE EEWKHWNWRS EKDIFMNGAY FRQSGDPNYE TDHTRRNMIK PKNGYAVSKL TKYAGALDCR VGRRC

Best Arabidopsis Sequence Match ( AT5G15110.1 )
(BLAST)

001: MEMVRLSKLM FTFCIAVLIP TIRGNISELD EYWSQRADEA REFTLQAYHS DPYEIVDHFH ERHYDNSTDV TTPEEDGDAK PEEEEKEFIE MLGSSTNSTR
101: RSLRGKGKGK WSKLKGPCTA SNPIDKCWRC RSDWAKRRKK LTRCVRGFGH RTTGGKRGRI YVVTSNLDED MVNPKPGTLR HAVIQKEPLW IIFKNDMSIR
201: LNQELLINSH KTIDARGANV HVAHGAGITM QFVKNVVIHG LHIHHISESS GGMIRDSVDH FGMRTRADGD GLSIYGSSNI WLDHISMSKC QDGLIDAIVG
301: STGITISNSH FTHHNDVMLL GAQNTNEADK HMQVTVAYNH FGKGLVQRMP RIRWGFVHVV NNDYTHWELY AIGGSQGPTI LSHGNRFIAP PHKPHYREVT
401: KRDYASEDEW KHWNWRSDKD VFMNGAYFRQ SGNPQYKCAH TRQQMIKPKN GLAVSKLTKY AGALDCRVGR RC

Arabidopsis Description

Pectate lyase family protein [Source:TAIR;Acc:AT5G15110]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.