Factsheet for Bra013833.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 7
plasma membrane 5
golgi 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34310	Canola	endoplasmic reticulum, vacuole	99.26	99.26
CDY03419	Canola	endoplasmic reticulum, extracellular	98.52	98.52
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	94.33	94.33
AT4G24780.1	Thale cress	endoplasmic reticulum, extracellular	92.61	92.16
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	88.42	86.3
PGSC0003DMT400039385	Potato	extracellular	84.98	85.61
KRH03893	Soybean	nucleus	85.22	85.22
KRH57176	Soybean	nucleus	84.73	84.73
Solyc03g111690.2.1	Tomato	nucleus	83.99	84.62
KRH63675	Soybean	endoplasmic reticulum, extracellular, vacuole	81.77	81.37
KRH54276	Soybean	endoplasmic reticulum, golgi, vacuole	81.03	80.64
PGSC0003DMT400069632	Potato	vacuole	80.3	80.49
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	81.28	79.9
Bra035852.1-P	Field mustard	extracellular	80.54	79.76
Solyc06g071840.1.1	Tomato	vacuole	69.7	78.83
Bra004073.1-P	Field mustard	extracellular	78.82	78.62
Bra033980.1-P	Field mustard	extracellular	77.59	77.59
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	77.59	77.59
Bra025274.1-P	Field mustard	extracellular	74.38	73.3
Bra039081.1-P	Field mustard	extracellular, plastid	73.4	72.33
Bra033008.1-P	Field mustard	extracellular	69.7	71.11
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	70.69	69.49
Bra036155.1-P	Field mustard	extracellular	71.43	69.38
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	68.97	69.14
Bra020672.1-P	Field mustard	extracellular	70.69	68.82
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	68.47	65.72
Bra015341.1-P	Field mustard	extracellular	68.23	64.27
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	67.98	64.04
Bra032494.1-P	Field mustard	extracellular	67.98	64.04
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	69.46	62.53
Bra015000.1-P	Field mustard	golgi, plasma membrane	63.55	57.72
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	69.7	57.52
Bra035588.1-P	Field mustard	extracellular	53.94	56.44
Bra019729.1-P	Field mustard	extracellular	50.74	55.68
Bra019730.1-P	Field mustard	extracellular	50.99	53.77
Bra006976.1-P	Field mustard	cytosol	59.85	53.17
Bra013585.1-P	Field mustard	extracellular	50.99	52.67
Bra020859.1-P	Field mustard	extracellular	50.49	51.9
Bra028549.1-P	Field mustard	plasma membrane	60.1	49.8
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	59.36	49.08
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	58.13	48.16
Bra012756.1-P	Field mustard	extracellular	45.07	47.04
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	54.43	46.92
Bra017412.1-P	Field mustard	extracellular	52.71	46.62
Bra005799.1-P	Field mustard	extracellular, golgi	58.62	46.48
Bra026832.1-P	Field mustard	extracellular	51.72	46.46
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	54.19	46.32
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	58.87	45.61
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	51.23	45.51
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	51.23	45.41
Bra023504.1-P	Field mustard	extracellular	53.2	44.91
Bra024811.1-P	Field mustard	extracellular	50.74	44.88
Bra026221.1-P	Field mustard	endoplasmic reticulum	50.25	44.54
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	53.69	43.69

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra013833	EnsemblPlants:Bra013833.1
EnsemblPlants:Bra013833.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4DBH3	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF28	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI0002546654	SEG:seg	:	:	:

Description

AT4G24780 (E=4e-223) | pectate lyase family protein

Coordinates

chrA01:-:7997604..7999154

Molecular Weight (calculated)

44616.9 Da

IEP (calculated)

7.938

GRAVY (calculated)

-0.303

Length

406 amino acids

Sequence
(BLAST)

001: MQTKKLFISI VSFLLYSPLM FSSPVPDPEA IVEEVHKSIN ASGAARRKLG YLSCSTGNPI DDCWRCDSNW EKNRQRLADC AIGFGKNAIG GRDGRIYVVT
101: DSGNDDPVTP KPGTLRHAVI QDEPLWIIFQ RDMTIHLKEE LIMNSFKTID GRGASVHIAG GPCITIQYVT NIIIHGIHIH DCKPGGNAMV RSSPRHFGWR
201: TISDGDGVSI FGGSHVWVDH CSLSNCDDGL IDAIMGSTAI TLSNNYMTHH DKVMLLGHSD TYTRDKNMQI TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY
301: THWEMYAIGG SANPTINSQG NRFVAPNIRF SKEVTKHEDA PESEWKSWNW RSSGDLLLNG AFFTPSGGAS SSSYAKASSL GARPSSLVGP LTLGSGALNC
401: RKGSRC

Best Arabidopsis Sequence Match ( AT4G24780.1 )
(BLAST)

001: MKMQTKKLFI TIVSFLLYAP LFLSSPVPDP ESVVEEVHKS INASVAGRRK LGYLSCTTGN PIDDCWRCDP HWEQHRQRLA DCAIGFGKNA IGGRDGRIYV
101: VTDSGNDNPV SPKPGTLRHA VVQDEPLWII FQRDMTIQLK EELIMNSFKT IDGRGASVHI SGGPCITIQY VTNIIIHGIH IHDCKQGGNA MVRSSPRHFG
201: WRTISDGDGV SIFGGSHVWV DHCSFSNCED GLIDAIMGST AITLSNNHMT HHDKVMLLGH SDTYSRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWEMYAI GGSANPTINS QGNRFLAPNI RFSKEVTKHE DAPESEWKRW NWRSSGDLLL NGAFFTPSGG AASSSYAKAS SLGAKPSSLV GPLTSTSGAL
401: NCRKGSRC

Arabidopsis Description

Probable pectate lyase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M8]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.