Factsheet for Bra019730.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
nucleus 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98091	Canola	extracellular	96.1	99.73
AT1G11920.1	Thale cress	endoplasmic reticulum, extracellular	90.91	91.15
Bra019729.1-P	Field mustard	extracellular	71.69	74.59
Bra013585.1-P	Field mustard	extracellular	66.23	64.89
Bra020859.1-P	Field mustard	extracellular	66.49	64.81
PGSC0003DMT400042396	Potato	endoplasmic reticulum, extracellular, vacuole	61.56	59.7
Bra012756.1-P	Field mustard	extracellular	57.92	57.33
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	56.1	53.2
Bra033980.1-P	Field mustard	extracellular	55.32	52.46
Bra004073.1-P	Field mustard	extracellular	54.81	51.84
Bra020672.1-P	Field mustard	extracellular	55.32	51.08
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	53.77	50.99
Bra039081.1-P	Field mustard	extracellular, plastid	54.03	50.49
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	52.99	50.25
Bra036155.1-P	Field mustard	extracellular	54.29	50.0
Bra025274.1-P	Field mustard	extracellular	53.25	49.76
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	54.29	49.41
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	52.99	49.39
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	51.69	49.14
Bra033008.1-P	Field mustard	extracellular	50.65	48.99
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	52.21	48.67
Bra035852.1-P	Field mustard	extracellular	51.43	48.29
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	54.03	48.26
Bra015341.1-P	Field mustard	extracellular	53.77	48.03
Bra032494.1-P	Field mustard	extracellular	53.51	47.8
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	51.43	47.6
Bra015000.1-P	Field mustard	golgi, plasma membrane	54.03	46.53
Bra035588.1-P	Field mustard	extracellular	46.49	46.13
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	53.51	45.68
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	54.55	42.68
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	52.21	40.94
Bra006976.1-P	Field mustard	cytosol	48.31	40.7
Bra026221.1-P	Field mustard	endoplasmic reticulum	47.79	40.17
Bra026832.1-P	Field mustard	extracellular	46.75	39.82
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	50.39	39.59
Bra017412.1-P	Field mustard	extracellular	47.01	39.43
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	46.75	39.39
Bra024811.1-P	Field mustard	extracellular	46.75	39.22
Bra028549.1-P	Field mustard	plasma membrane	49.61	38.98
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	46.23	38.86
Bra023504.1-P	Field mustard	extracellular	48.31	38.67
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	47.27	38.64
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	47.01	38.11
Bra005799.1-P	Field mustard	extracellular, golgi	50.39	37.89
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	48.31	37.27
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	50.13	36.83

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra019730	EnsemblPlants:Bra019730.1
EnsemblPlants:Bra019730.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4DT87	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF18	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI000253ED7B	SEG:seg	:	:	:

Description

AT1G11920 (E=4e-202) | pectate lyase family protein

Coordinates

chrA06:+:4751443..4753070

Molecular Weight (calculated)

42796.0 Da

IEP (calculated)

9.514

GRAVY (calculated)

-0.240

Length

385 amino acids

Sequence
(BLAST)

001: MASLLLTVSL LFAALSYPLV EAAYYSNSYY TTPKPLLNPI DSCWRRNPNW ASNRRALADC AVGFGKAAIG GKYGSVYVVT NPSDNPENPR PGTLRHAVIQ
101: SKPLWITFAR DMVIVLQNEL IMNSYKTIDG RGAKVEIAYG ACITVQHVNH IIIHGISIHD CKPGKSGRVR SSPTHIGSRK GSDGDAIAIF DSSHIWIDHC
201: FFSRCQDGLI DVLHASTAVT ISNNYFTQHD KVMLLGHNDN NVEDRIMRVT IAFNHFGPGL IERMPRVRLG YAHVANNRYE KWQMYAIGGS ANPTIFSEGN
301: YFVASDDLSK KQVTKRIESG YDSKRWKWRT SKDVFKNGAY FVQSGYGTVT PLYGRAEWFP VSHGSLVPSL TSSAGPLRCY SGRTC

Best Arabidopsis Sequence Match ( AT1G11920.1 )
(BLAST)

001: MASLFLTIIS LLFAAFSSSV VEAAYSNGYT IPKLLPNPID SCWRRNPYWA SNRRALADCA VGFGKSAVGG KYGSIYVVTN PSDDPENPRP GTLRYAVIQS
101: KPLWITFARD MVIVLRNELI MNSYKTIDGR GAKVEIAYGP CITIQHVSHV IIHGISIHDC KPGKSGRVRS SPTHVGSRKG SDGDAIAIFD SSHIWIDHCF
201: FSRCQDGLID VLHASTAVTI SNNYFTQHDK VMLLGHNDNN VEDKIMRVTI AFNHFGPGLI ERMPRVRRGY AHVANNRYEK WQMYAIGGSA DPTIFSEGNY
301: FVASDDPSKK QVTKRIDSGY DWKRWKWRTS KDVFKNGAYF VPSGYGTVTP LYGRAERFPV SHGSLVPLLT SSAGPLHCYS GRIC

Arabidopsis Description

Putative pectate lyase 2 [Source:UniProtKB/Swiss-Prot;Acc:O65388]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.