Factsheet for Bra015000.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6
plastid 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	extracellular, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77470	Canola	golgi, plasma membrane	99.78	97.17
AT3G24230.1	Thale cress	endoplasmic reticulum, golgi, vacuole	76.96	76.11
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	71.36	75.41
HORVU2Hr1G002930.1	Barley	cytosol	46.09	75.18
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	74.72	74.06
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	69.35	72.09
GSMUA_Achr8P12860_001	Banana	cytosol	55.93	70.82
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	56.82	70.56
KRG90246	Soybean	nucleus	69.13	68.97
Bra020672.1-P	Field mustard	extracellular	64.21	68.82
Bra029614.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	61.97	68.4
GSMUA_Achr5P15620_001	Banana	cytosol	53.69	68.38
Bra036155.1-P	Field mustard	extracellular	63.76	68.18
KRH33474	Soybean	nucleus	68.46	68.0
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	65.55	67.98
GSMUA_Achr4P26690_001	Banana	extracellular	55.7	67.85
Bra032696.1-P	Field mustard	endoplasmic reticulum, extracellular	62.42	67.55
GSMUA_Achr11P...	Banana	extracellular	54.59	67.03
Bra015341.1-P	Field mustard	extracellular	64.43	66.82
Solyc09g091430.2.1	Tomato	nucleus	67.34	66.74
Bra032494.1-P	Field mustard	extracellular	64.21	66.59
PGSC0003DMT400076251	Potato	extracellular	66.67	66.52
GSMUA_Achr7P04580_001	Banana	endoplasmic reticulum, extracellular	65.1	65.1
Bra004254.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	58.61	64.53
Zm00001d025067_P001	Maize	mitochondrion	65.1	64.1
Zm00001d004448_P001	Maize	endoplasmic reticulum	64.21	64.06
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi	64.88	63.88
GSMUA_Achr3P00290_001	Banana	endoplasmic reticulum, extracellular, vacuole	58.61	63.75
Bra004073.1-P	Field mustard	extracellular	57.94	63.64
Bra013833.1-P	Field mustard	endoplasmic reticulum, vacuole	57.72	63.55
Bra033980.1-P	Field mustard	extracellular	57.72	63.55
Bra010482.1-P	Field mustard	endoplasmic reticulum, extracellular	57.27	63.05
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	57.49	62.23
Bra035852.1-P	Field mustard	extracellular	57.05	62.2
TraesCS2D01G018000.1	Wheat	golgi	65.55	61.95
KXG25802	Sorghum	plastid	65.55	60.54
TraesCS2B01G024500.2	Wheat	golgi	65.1	60.5
Bra039081.1-P	Field mustard	extracellular, plastid	55.7	60.44
TraesCS2A01G016500.1	Wheat	golgi	64.65	60.08
Bra025274.1-P	Field mustard	extracellular	55.03	59.71
Bra019209.1-P	Field mustard	endoplasmic reticulum, extracellular	54.36	58.41
Bra033008.1-P	Field mustard	extracellular	51.68	58.04
Bra015070.1-P	Field mustard	endoplasmic reticulum, extracellular	63.76	57.93
HORVU2Hr1G002880.2	Barley	mitochondrion	64.21	56.27
Bra019730.1-P	Field mustard	extracellular	46.53	54.03
Bra019729.1-P	Field mustard	extracellular	44.52	53.78
Bra006976.1-P	Field mustard	cytosol	52.8	51.64
Bra035588.1-P	Field mustard	extracellular	44.52	51.29
Bra020859.1-P	Field mustard	extracellular	43.62	49.37
Bra013585.1-P	Field mustard	extracellular	43.4	49.36
Bra028549.1-P	Field mustard	plasma membrane	53.91	49.18
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	52.13	47.45
Bra006279.1-P	Field mustard	endoplasmic reticulum, extracellular	48.32	45.47
Bra026832.1-P	Field mustard	extracellular	45.86	45.35
Bra023504.1-P	Field mustard	extracellular	48.32	44.91
Bra017412.1-P	Field mustard	extracellular	46.09	44.88
Bra005799.1-P	Field mustard	extracellular, golgi	51.23	44.73
Bra024811.1-P	Field mustard	extracellular	45.64	44.44
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	48.55	44.29
Bra012756.1-P	Field mustard	extracellular	38.26	43.96
Bra001011.1-P	Field mustard	endoplasmic reticulum, extracellular	46.31	43.95
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	51.23	43.7
Bra008721.1-P	Field mustard	endoplasmic reticulum, extracellular	48.77	43.69
Bra016700.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	44.74	43.67
Bra026221.1-P	Field mustard	endoplasmic reticulum	44.52	43.45
Bra026583.1-P	Field mustard	endoplasmic reticulum, plasma membrane	44.3	43.33

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	EnsemblPlantsGene:Bra015000	EnsemblPlants:Bra015000.1
EnsemblPlants:Bra015000.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	UniProt:M4DES8	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF63	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI0002540D7A	SEG:seg	:	:

Description

AT3G24230 (E=8e-198) | pectate lyase family protein

Coordinates

chrA07:+:4466895..4469249

Molecular Weight (calculated)

49656.9 Da

IEP (calculated)

8.424

GRAVY (calculated)

-0.360

Length

447 amino acids

Sequence
(BLAST)

001: MASSSQKLTS ACFVVLLIFV VCVLTATNLR NNQVSLSRKL KTEDSHSFNN STIAIRREGV ELNEHAVADP DQVALLQTNE QNITERRKLG FFSCGNGNLI
101: DDCWRCDPNW HMNRKRLADC GMGFGSNATG GRDGRFYVVT DPTDEDMEFP RSGTLRHAVI QVEPLWIIFK RDMVITLKQE LIMNSYKTID ARGANVHVAN
201: GACITIQGIT HVIVHGLHIH DCIRTGNAMV RSSPSHYGMR NMSDGDAVSI YASSHIWIDH NSLSKCADGL VDVVMGSTAV TISNNHLTHH NEVMLLGNND
301: LYTQDKNMKV TIAYNHFGEG LRQRMPRCRH GYFHVVNNDY THWEMYAIGG SANPTINSQG NRYAAPKNRY AKQVTKRVRT EKSEWKKWNW RSEGDMLVNG
401: AFFIQSGEGA TANYESASSL AAKPASMVGS ITSTAGALGC RSGKPCY

Best Arabidopsis Sequence Match ( AT3G24230.1 )
(BLAST)

001: MATSSLKLTS ACFVLLFIFV GCVLTATNLR NNEISRSRKL KTEDSKSFNS SPMTTRLDGV VELNEHAVTD PDKVAHEVSN LIHMSEQNIT ARRKLGFFSC
101: GNGNLIDDCW RCDRNWNKNR KHLADCGMGF GSKAFGGRNG SYYVVTDHSD DDVVNPKPGT LRHAVIQVEP LWIIFKRDMV IKLKQELIMN SFKTIDARGA
201: NVHIANGACI TIQNITNVIV HGLHIHDCKR TGNVTVRSSP SQAGFRGTAD GDAINIFGSS HIWIDHNSLS NCTDGLVDVV NGSTAITISN NHFTHHDEVM
301: LLGHNDSYTR DKMMQVTVAY NHFGEGLIQR MPRCRHGYFH VVNNDYTHWK MYAIGGSANP TINSQGNRFA APKNHSAKEV TKRLDTKGNE WMEWNWRSEK
401: DLLVNGAFFT PSGEGASGDS QTLSLPAKPA SMVDAITASA GALSCRRGKP CY

Arabidopsis Description

Probable pectate lyase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM5]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.