Factsheet for GSMUA_Achr4P26690_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	extracellular, golgi, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P15620_001	Banana	cytosol	86.38	90.31
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	83.65	85.28
GSMUA_Achr11P...	Banana	extracellular	79.84	80.49
GSMUA_Achr8P12860_001	Banana	cytosol	77.38	80.45
GSMUA_Achr3P00290_001	Banana	endoplasmic reticulum, extracellular, vacuole	80.38	71.78
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	80.11	68.37
GSMUA_Achr7P04580_001	Banana	endoplasmic reticulum, extracellular	80.11	65.77
Bra040809.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	74.66	64.78
AT1G04680.1	Thale cress	extracellular	75.75	64.5
KRG90246	Soybean	nucleus	78.47	64.29
KRH33474	Soybean	nucleus	78.75	64.22
CDX86615	Canola	endoplasmic reticulum, extracellular, golgi	74.93	63.81
CDY15517	Canola	endoplasmic reticulum, extracellular, golgi	74.93	63.81
Bra030583.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	74.93	63.81
CDX89799	Canola	extracellular	74.66	63.57
Bra015341.1-P	Field mustard	extracellular	74.39	63.34
CDY61137	Canola	extracellular	74.11	63.11
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi	77.93	63.0
Bra032494.1-P	Field mustard	extracellular	73.57	62.65
PGSC0003DMT400076251	Potato	extracellular	76.29	62.5
Solyc09g091430.2.1	Tomato	nucleus	75.75	61.64
CDY01151	Canola	endoplasmic reticulum, extracellular, vacuole	75.75	61.5
Bra032730.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	75.48	61.42
CDY53564	Canola	endoplasmic reticulum, extracellular, vacuole	76.02	61.32
GSMUA_Achr6P28260_001	Banana	endoplasmic reticulum, extracellular	67.03	60.44
AT4G13710.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	77.38	60.43
CDY18738	Canola	endoplasmic reticulum, extracellular	76.84	59.24
Bra015000.1-P	Field mustard	golgi, plasma membrane	67.85	55.7
CDY66697	Canola	endoplasmic reticulum, golgi	67.57	55.48
AT3G24230.1	Thale cress	endoplasmic reticulum, golgi, vacuole	67.57	54.87
CDX77470	Canola	golgi, plasma membrane	67.85	54.25
GSMUA_Achr10P...	Banana	cytosol	50.95	54.05
GSMUA_Achr4P25120_001	Banana	extracellular	57.77	47.43
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	55.04	46.12
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	53.68	45.08
GSMUA_Achr10P...	Banana	extracellular	46.32	43.59
GSMUA_Achr1P03320_001	Banana	plasma membrane	58.58	42.07
GSMUA_Achr7P08840_001	Banana	nucleus	52.86	28.96

Protein Annotations

EnsemblPlants:GSMUA_Achr4P26690_001	EnsemblPlants:GSMUA_Achr4T26690_001	EnsemblPlantsGene:GSMUA_Achr4G26690_001	Gene3D:2.160.20.10	InterPro:IPR012334	InterPro:Pec_lyase
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31683	PANTHER:PTHR31683:SF34	PFAM:PF00544	SEG:seg
SignalP:SignalP-noTM	SMART:SM00656	SUPFAM:SSF51126	UniParc:UPI00029585D9	UniProt:M0SSD1	MapMan:21.3.5.2

Description

Probable pectate lyase 15 [Source:GMGC_GENE;Acc:GSMUA_Achr4G26690_001]

Coordinates

chr4:-:25874887..25878357

Molecular Weight (calculated)

40352.3 Da

IEP (calculated)

8.279

GRAVY (calculated)

-0.198

Length

367 amino acids

Sequence
(BLAST)

001: MMMMMMMMMM MMMMMFESDV VVGAVDDPEF IASKVNIRQI SNGTARRSLD DLSTCVTGNP IDDCWRCDPK WHLRRKRLAD CGIGFGRSAI GGRNGRFYHQ
101: ELIMNGFKTI DGRGANVHIA NGACITIQFV TNVIIHGLHI HDCKPTGNAM VRSSPSHYGW RTMADGDAIS IFGSSHIWVD HNSLSNCADG LVDAVMGSTA
201: ITISNNYFTH HNEVMLLGHS DSYKRDKAMQ VTIAFNHFGE GLVQRMPRCR HGYFHVVNND YTHWEMYAIG GSANPTINSQ GNRYLAPTDP FAKEVTKRVA
301: TSSDTWKSWN WRSEGDLLLN GAYFTPSGAG ASASYSRASS LGAKTSSMVA SITAGAGALQ CRKGSLC

Best Arabidopsis Sequence Match ( AT1G04680.1 )
(BLAST)

001: MAVLPTWLLA MMCLLFFVGA MENTTHDNIS SLPRSDETEW NQHAVTNPDE VADEVLALTE MSVRNHTERR KLGYFTCGTG NPIDDCWRCD PNWHKNRKRL
101: ADCGIGFGRN AIGGRDGRFY VVTDPRDDNP VNPRPGTLRH AVIQDRPLWI VFKRDMVIQL KQELIVNSFK TIDGRGANVH IANGGCITIQ FVTNVIVHGL
201: HIHDCKPTGN AMVRSSETHF GWRTMADGDA ISIFGSSHVW IDHNSLSHCA DGLVDAVMGS TAITISNNHL THHNEVMLLG HSDSYMRDKA MQVTIAYNHF
301: GVGLIQRMPR CRHGYFHVVN NDYTHWEMYA IGGSANPTIN SQGNRYAAPK NPFAKEVTKR VDTPASHWKG WNWRSEGDLL QNGAYFTSSG AAASGSYARA
401: SSLSAKSSSL VGHITSDAGA LPCRRGRQCS S

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A178W464]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.