Factsheet for GSMUA_Achr1P03320_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
plasma membrane 4
extracellular 2
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P25120_001	Banana	extracellular	71.82	82.1
TraesCS1A01G143600.1	Wheat	extracellular	61.06	65.0
Os10t0457200-01	Rice	plasma membrane	62.23	64.77
TraesCS1B01G161000.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	60.27	64.71
TraesCS1D01G142400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	60.47	64.64
KXG38421	Sorghum	extracellular	59.69	63.28
GSMUA_Achr5P15620_001	Banana	cytosol	42.07	61.25
GSMUA_Achr11P...	Banana	cytosol, extracellular, vacuole	43.05	61.11
Zm00001d032806_P001	Maize	cytosol, plastid	50.88	60.19
GSMUA_Achr8P12860_001	Banana	cytosol	41.49	60.06
GSMUA_Achr11P...	Banana	extracellular	41.88	58.79
GSMUA_Achr4P26690_001	Banana	extracellular	42.07	58.58
HORVU1Hr1G038220.7	Barley	endoplasmic reticulum, extracellular	55.58	58.32
KRH67761	Soybean	endoplasmic reticulum, extracellular, vacuole	50.68	55.11
PGSC0003DMT400009869	Potato	cytosol	45.79	54.93
VIT_08s0007g04820.t01	Wine grape	plastid	52.25	54.6
Bra006976.1-P	Field mustard	cytosol	48.73	54.49
GSMUA_Achr6P28260_001	Banana	endoplasmic reticulum, extracellular	42.86	53.81
GSMUA_Achr3P00290_001	Banana	endoplasmic reticulum, extracellular, vacuole	43.05	53.53
CDX73573	Canola	extracellular	49.71	53.36
CDX78152	Canola	extracellular	49.32	52.94
KRH19954	Soybean	endoplasmic reticulum, extracellular, plasma membrane	49.32	52.83
Solyc09g008380.2.1	Tomato	nucleus	49.32	52.17
AT3G53190.1	Thale cress	extracellular	49.12	51.97
Bra028549.1-P	Field mustard	plasma membrane	49.71	51.84
CDX67560	Canola	plasma membrane	49.32	51.43
GSMUA_Achr7P04580_001	Banana	endoplasmic reticulum, extracellular	43.64	49.89
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, golgi	44.23	49.78
GSMUA_Achr10P...	Banana	cytosol	31.51	46.53
CDY13312	Canola	plasma membrane	48.53	46.27
GSMUA_Achr2P16830_001	Banana	endoplasmic reticulum, extracellular	36.79	42.92
GSMUA_Achr6P00830_001	Banana	endoplasmic reticulum, extracellular	35.62	41.65
GSMUA_Achr10P...	Banana	extracellular	29.75	38.97
GSMUA_Achr7P08840_001	Banana	nucleus	34.44	26.27

Protein Annotations

KEGG:00040+4.2.2.2	Gene3D:2.160.20.10	MapMan:21.3.5.2	InterPro:AmbAllergen	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016829	GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr1G03320_001	EnsemblPlants:GSMUA_Achr1P03320_001
EnsemblPlants:GSMUA_Achr1T03320_001	InterPro:IPR012334	UniProt:M0RWP0	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683
PANTHER:PTHR31683:SF11	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126
UniParc:UPI000295FB36	SEG:seg	:	:	:	:

Description

Probable pectate lyase 12 [Source:GMGC_GENE;Acc:GSMUA_Achr1G03320_001]

Coordinates

chr1:-:2709757..2712338

Molecular Weight (calculated)

55040.3 Da

IEP (calculated)

6.815

GRAVY (calculated)

-0.111

Length

511 amino acids

Sequence
(BLAST)

001: MEGEGGERGD SILSPKFSPS PPCFLHLHLH LPHCSLNIKV TILFLVYLPT PPSFPPRMLL LTHILLVFLS FPLLLAATPF HNSSLHLHAH PDPDSVAREV
101: HRQVESSRRR ALLAAGVKDQ QCLTGNPIDD CWRCSGTDWR QDRQRLADCG IGFGRDAMGG KGGPIYELLV NSFKTIDGRG AVVHIAGGAC ITLQYVSNVI
201: IHNVHVHHCV PAGEANVRSS PTHYGWRTRS DGDGISIYSG RKIWVDHCEL SSCTDGLIDA IMGSTGITIS NSYFSHHDEV MLLGHTDGYL PDSAMQVTIA
301: FNRFGEQLVQ RMPRCRRGYF HVVNNDFTSW EMYAIGGSAN PTINSQGNRY IAPANPNAKE ARSRTKPSLL VETEESEWSG WNWRTEGDVL VNGAFFVPSG
401: EGLDAKYAKA ESLDPKSAAL IDQLTLNAGV LGGPRDNGVG TAYSGVNYGG SAATADGGGG ASGWGVGYGP LGMVFGSGAP APSSRDSIVM ITTALLSASL
501: FVTTFFSLHP L

Best Arabidopsis Sequence Match ( AT3G53190.1 )
(BLAST)

001: MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF
101: GQYALGGKGG QFYFVTDSSD DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI TLQYVSNIII HNIHIHHCYQ
201: SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301: MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS
401: ASFITQITFH SGVLGVGGRN NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM FML

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.