Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 6
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_17s0000g09810.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 82.06 | 82.88 |
| VIT_01s0137g00240.t01 | Wine grape | extracellular | 80.84 | 81.64 |
| Solyc05g014000.2.1 | Tomato | extracellular, nucleus | 79.36 | 80.55 |
| PGSC0003DMT400027955 | Potato | extracellular | 78.87 | 80.05 |
| Bra035852.1-P | Field mustard | extracellular | 79.36 | 78.78 |
| Bra038614.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 79.36 | 78.21 |
| CDY41506 | Canola | endoplasmic reticulum, extracellular, vacuole | 79.36 | 78.21 |
| CDY48132 | Canola | endoplasmic reticulum, golgi | 79.61 | 75.7 |
| CDY16732 | Canola | endoplasmic reticulum, golgi | 79.36 | 75.47 |
| AT5G63180.1 | Thale cress | plastid | 79.12 | 74.54 |
| GSMUA_Achr8P12860_001 | Banana | cytosol | 62.65 | 72.24 |
| GSMUA_Achr11P... | Banana | cytosol, extracellular, vacuole | 63.39 | 71.67 |
| CDY65626 | Canola | golgi | 79.36 | 71.15 |
| GSMUA_Achr11P... | Banana | extracellular | 62.65 | 70.05 |
| GSMUA_Achr5P15620_001 | Banana | cytosol | 59.46 | 68.95 |
| GSMUA_Achr4P26690_001 | Banana | extracellular | 60.44 | 67.03 |
| GSMUA_Achr7P04580_001 | Banana | endoplasmic reticulum, extracellular | 73.22 | 66.67 |
| GSMUA_Achr3P00290_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 65.36 | 64.72 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, golgi | 71.99 | 64.54 |
| GSMUA_Achr10P... | Banana | cytosol | 46.19 | 54.34 |
| GSMUA_Achr2P16830_001 | Banana | endoplasmic reticulum, extracellular | 56.02 | 52.05 |
| GSMUA_Achr6P00830_001 | Banana | endoplasmic reticulum, extracellular | 53.56 | 49.89 |
| GSMUA_Achr10P... | Banana | extracellular | 47.67 | 49.74 |
| GSMUA_Achr4P25120_001 | Banana | extracellular | 53.07 | 48.32 |
| GSMUA_Achr1P03320_001 | Banana | plasma membrane | 53.81 | 42.86 |
| GSMUA_Achr7P08840_001 | Banana | nucleus | 54.55 | 33.13 |
Protein Annotations
| KEGG:00040+4.2.2.2 | Gene3D:2.160.20.10 | MapMan:21.3.5.2 | InterPro:AmbAllergen | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016829 | GO:GO:0030570 | GO:GO:0045490 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr6G28260_001 | EnsemblPlants:GSMUA_Achr6P28260_001 |
| EnsemblPlants:GSMUA_Achr6T28260_001 | InterPro:IPR012334 | UniProt:M0TAX1 | PFAM:PF00544 | PRINTS:PR00807 | PANTHER:PTHR31683 |
| PANTHER:PTHR31683:SF28 | InterPro:Pec_lyase | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00656 | SUPFAM:SSF51126 |
| SignalP:SignalP-noTM | UniParc:UPI000296AF7B | SEG:seg | : | : | : |
Description
Probable pectate lyase 22 [Source:GMGC_GENE;Acc:GSMUA_Achr6G28260_001]
Coordinates
chr6:-:28661890..28664031
Molecular Weight (calculated)
44672.5 Da
IEP (calculated)
6.855
GRAVY (calculated)
-0.301
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAFLFFLTI AAFTAPIYSS RAPLTSAAVR DPELVVQEVQ RSLNVSRRRL GYLSCGTGNP IDDCWRCDPD WADNRQRLAD CAIGFGKNAI GGRDGEIYVV
101: TDSGDDDPVN PKPGTLRYAV IQEEPLWIIF KRDMVIQLKE ELIMNSHKTI DGRGASVHIS GGPCITIQYV TNIIIHGVHI HDCKQGGNAY VRDSPGHYGW
201: RTVSDGDGVS IFGGSHVWVD HCTLSNCHDG LIDAIHGSTA ITISNNYLSH HDKVMLLGHS DELTSDKSMQ VTIAFNHFGE DLVQRMPRCR HGYFHVVNND
301: YTHWEMYAIG GSAAPTINSQ GNRFLAPNDR FAKEVTKRED AQESEWKKWN WRSEGDQMLN GAFFTPSGAG ASSSYAKASS LGARSSSLVG TITVSAGVLS
401: CKKGSRC
101: TDSGDDDPVN PKPGTLRYAV IQEEPLWIIF KRDMVIQLKE ELIMNSHKTI DGRGASVHIS GGPCITIQYV TNIIIHGVHI HDCKQGGNAY VRDSPGHYGW
201: RTVSDGDGVS IFGGSHVWVD HCTLSNCHDG LIDAIHGSTA ITISNNYLSH HDKVMLLGHS DELTSDKSMQ VTIAFNHFGE DLVQRMPRCR HGYFHVVNND
301: YTHWEMYAIG GSAAPTINSQ GNRFLAPNDR FAKEVTKRED AQESEWKKWN WRSEGDQMLN GAFFTPSGAG ASSSYAKASS LGARSSSLVG TITVSAGVLS
401: CKKGSRC
001: MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC
Arabidopsis Description
Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.