Factsheet for VIT_17s0000g09810.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 7
plasma membrane 6
golgi 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0137g00240.t01	Wine grape	extracellular	86.35	86.35
VIT_14s0219g00230.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	84.62	84.62
GSMUA_Achr6P28260_001	Banana	endoplasmic reticulum, extracellular	82.88	82.06
Bra038614.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	82.38	80.39
CDY41506	Canola	endoplasmic reticulum, extracellular, vacuole	82.38	80.39
Bra035852.1-P	Field mustard	extracellular	81.14	79.76
CDY48132	Canola	endoplasmic reticulum, golgi	81.39	76.64
CDY16732	Canola	endoplasmic reticulum, golgi	81.14	76.4
AT5G63180.1	Thale cress	plastid	81.64	76.16
CDY65626	Canola	golgi	82.38	73.13
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	73.7	69.07
VIT_07s0005g05520.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	72.46	65.62
VIT_19s0015g00510.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	61.79	61.94
VIT_10s0116g01160.t01	Wine grape	endoplasmic reticulum, extracellular	53.6	56.69
VIT_17s0000g05740.t01	Wine grape	extracellular	59.8	56.18
VIT_13s0019g04900.t01	Wine grape	extracellular	55.83	54.09
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	58.06	52.82
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	57.32	52.62
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	56.58	51.47
VIT_08s0007g04820.t01	Wine grape	plastid	62.03	51.12
VIT_13s0019g04910.t01	Wine grape	extracellular	61.79	50.2

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:100243265	wikigene:100243265	Gene3D:2.160.20.10	MapMan:21.3.5.2	EMBL:AM448261
InterPro:AmbAllergen	ProteinID:CAN76500	ProteinID:CAN76500.1	ProteinID:CBI14899	ProteinID:CBI14899.3	UniProt:D7SHE0
EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016829	GO:GO:0030570	GO:GO:0045490
GO:GO:0046872	InterPro:IPR012334	EntrezGene:LOC100243265	wikigene:LOC100243265	PFAM:PF00544	PRINTS:PR00807
PANTHER:PTHR31683	PANTHER:PTHR31683:SF28	InterPro:Pec_lyase	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656
SUPFAM:SSF51126	SignalP:SignalP-noTM	TIGR:TC59236	UniParc:UPI00015C86E4	ArrayExpress:VIT_17s0000g09810	EnsemblPlantsGene:VIT_17s0000g09810
EnsemblPlants:VIT_17s0000g09810.t01	unigene:Vvi.24390	RefSeq:XP_002275781	RefSeq:XP_002275781.1	RefSeq:XP_010663062.1	SEG:seg

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:D7SHE0]

Coordinates

chr17:-:11675130..11676755

Molecular Weight (calculated)

44093.9 Da

IEP (calculated)

6.969

GRAVY (calculated)

-0.288

Length

403 amino acids

Sequence
(BLAST)

001: MASSSLSLFF LFSLLSPILI ASSPVQDPEL VIQEVHRSIN ESRRNLGYLS CGSGNPIDDC WRCNANWEKN RQSLADCAIG FGKNAIGGKN GKIYVVTDSS
101: DDDVVNPKPG TLRYAVIQDE PLWIIFARDM VIKLKEELIM NSFKTIDGRG ASVHIAGGPC ITIQFVTNII IHGLNIHDCK QGGNTNVRDS PSHYGFRTIS
201: DGDGVSIFGG SHIWVDHCSL SNCHDGLIDA IHGSTAITIS NNYMTHHDKV MLLGHSDSYT QDKNMQVTIA FNHFGEGLVQ RMPRCRHGYF HVVNNDYTHW
301: EMYAIGGSAD PTINSQGNRF LAPNDRFSKE VTKHEDAPES QWKNWNWRSE GDLMLNGAYF TPSGAGASSS YARASSLGAR PSSLVASITG SAGALSCKKG
401: SRC

Best Arabidopsis Sequence Match ( AT1G67750.1 )
(BLAST)

001: MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV
101: VTDSSDKDVV NPKPGTLRHA VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN IHDCKRKGNA YVRDSPSHYG
201: WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN
301: DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL
401: FCRKGSRC

Arabidopsis Description

Probable pectate lyase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXD8]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.