Factsheet for VIT_13s0019g04910.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
golgi 5
plasma membrane 6
endoplasmic reticulum 5
vacuole 6
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G005000.2	Barley	cytosol	49.4	71.85
Solyc11g008140.1.1	Tomato	plasma membrane	64.92	71.71
PGSC0003DMT400079776	Potato	plasma membrane	69.96	70.82
KRG90767	Soybean	extracellular	71.57	70.72
KRH35994	Soybean	extracellular	70.56	69.44
VIT_13s0019g04900.t01	Wine grape	extracellular	56.25	67.07
PGSC0003DMT400011046	Potato	mitochondrion	39.31	67.01
Solyc03g071570.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	67.34	66.27
VIT_08s0007g04820.t01	Wine grape	plastid	65.12	66.05
Solyc05g055510.2.1	Tomato	plasma membrane	64.52	64.78
CDX70244	Canola	vacuole	57.26	64.4
VIT_14s0219g00230.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	51.41	63.28
CDY11284	Canola	extracellular, golgi	64.72	62.94
Bra003200.1-P	Field mustard	endoplasmic reticulum, extracellular	62.3	62.93
CDY07515	Canola	endoplasmic reticulum, extracellular, vacuole	62.3	62.8
AT5G04310.1	Thale cress	plasma membrane	65.32	62.55
CDX67615	Canola	endoplasmic reticulum, extracellular, vacuole	61.9	62.53
Bra007116.1-P	Field mustard	endoplasmic reticulum, extracellular	61.49	62.24
CDY56964	Canola	endoplasmic reticulum, extracellular, vacuole	61.69	62.2
Bra005799.1-P	Field mustard	extracellular, golgi	64.11	62.11
VIT_17s0000g09810.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	50.2	61.79
VIT_01s0137g00240.t01	Wine grape	extracellular	50.0	61.54
CDY58428	Canola	endoplasmic reticulum, golgi, plastid	63.71	61.36
AT3G54920.1	Thale cress	extracellular	61.09	60.48
CDY41382	Canola	endoplasmic reticulum, golgi	63.91	60.15
Bra009469.1-P	Field mustard	extracellular, plastid, vacuole	62.9	59.54
VIT_05s0051g00590.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	51.61	59.53
CDX73426	Canola	endoplasmic reticulum, extracellular, vacuole	61.9	59.38
PGSC0003DMT400060374	Potato	extracellular, plasma membrane, vacuole	66.13	57.44
VIT_07s0005g05520.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	51.41	57.3
VIT_19s0015g00510.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	45.16	55.72
VIT_10s0116g01160.t01	Wine grape	endoplasmic reticulum, extracellular	40.12	52.23
VIT_17s0000g05740.t01	Wine grape	extracellular	43.75	50.58
VIT_01s0026g01670.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	43.55	48.76
VIT_01s0026g01680.t01	Wine grape	endoplasmic reticulum, extracellular	43.15	48.31
VIT_14s0108g00030.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	40.93	46.24

Protein Annotations

KEGG:00040+4.2.2.2	EntrezGene:100246124	wikigene:100246124	Gene3D:2.160.20.10	MapMan:21.3.5.2	ProteinID:ADU02586
ProteinID:ADU02586.1	InterPro:AmbAllergen	ProteinID:CBI31413	ProteinID:CBI31413.3	UniProt:D7TM46	EMBL:FN595998
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016829
GO:GO:0030570	GO:GO:0045490	GO:GO:0046872	EMBL:GU270835	InterPro:IPR012334	EntrezGene:LOC100246124
wikigene:LOC100246124	PFAM:PF00544	PRINTS:PR00807	PANTHER:PTHR31683	PANTHER:PTHR31683:SF11	InterPro:Pec_lyase
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00656	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0001984840	ArrayExpress:VIT_13s0019g04910	EnsemblPlantsGene:VIT_13s0019g04910	EnsemblPlants:VIT_13s0019g04910.t01	unigene:Vvi.15667	SEG:seg

Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:D7TM46]

Coordinates

chr13:+:6603765..6608486

Molecular Weight (calculated)

53900.9 Da

IEP (calculated)

6.150

GRAVY (calculated)

-0.160

Length

496 amino acids

Sequence
(BLAST)

001: MLPNTCILLL CLLCSLSPLI RATLNLNLTL PHQHPNPEVV VDEVQRRLNV SISRRQVLSV QENDGSSCLT GNPVDDCWRC DPNWQNNRQR LADCGIGFGL
101: DAMGGKGGQF YVVTDSSDED PINPAPGTLR HAVIQTQPLW ITFSTNMLIK LKYELIVNSF KTIDGRGANV HITGRGCMTL QYVSNVIIHG VHVHHCVPSG
201: NADIRSSPTH VGWRGKSDGD GISIFGSRKI WIDHCSLSYC RDGLIDAIMG STGITISNNY FSHHDEVMLL GHDDKYSPDS GMQVTIAFNH FGEGLVQRMP
301: RCRRGYIHVV NNDFTQWEMY AIGGSANPTI NSQGNRYTAP GDINAKEVTK RVETDEEDWA EWNWRTEGDV MVNGAFFVPS GVGLSTQYAK ASSVEPKSAA
401: LIQQLTMNAG ALSGSRDDSM GVSYPGFSSG GTSSSISNNG GHGSSDDPDY FGMIFGSGSG SGAPPPPSVT IPMFFSLLII LILYVTINHG GVLLFL

Best Arabidopsis Sequence Match ( AT5G04310.2 )
(BLAST)

001: MVAHERRIHN LQKPTCICII WFCLLVSLSH HGRASSTSAS IFNLSLPHQH PFPEHVVLNV QRKLNDSLSR RQLLTYQQDD GTTASSPIPS CITGNPIDDC
101: WRCDPNWSAN RQRLADCSIG FGQGTLGGKG GQFYLVTDSS DNDAANPIPG TLRHAVIQPE PLWIIFSSDM GIKLKHELII GSYKTIDGRG TNIQITGHGC
201: LTIQQVSHVI IHNVHIHHCK PSGNTLVASS PTHVGFRGVS DGDGISVSAS HHIWVDHCSL GYCADGLIDV ILASTAVTIS NNYFSHHDEV MLLGHDDRYT
301: ADKGMQVTIA FNHFGEGLVQ RMPRCRHGYI HVVNNDFTAW EMYAIGGSAS PTINSQGNRY TAPIDPNAKE VTKRVDSNEK HWSGWNWRTE GDVMVNGAFF
401: VPSGDGVSPA YARATSVQPK AAAIIDQLTV NAGVFGDPSG RNGQGGSFPG ITNGGGTITR GYSKSGPAGG GSGSDSDDGL FTLIFGNNSG AVALRPGQVW
501: SILLIIILYW YIPHHTRS

Arabidopsis Description

Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F4JW80]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.